Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Gm43972-201ENSMUST00000181398 1467 ntBASIC13.44□□□□□ -0.26
Scn11aQ9R053 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Fbp2-201ENSMUST00000021907 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 AC107763.1-201ENSMUST00000226082 1365 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm13192-201ENSMUST00000101199 208 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm12463-201ENSMUST00000118271 849 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm15707-201ENSMUST00000118804 996 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm10443-201ENSMUST00000119024 210 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 1700112K13Rik-201ENSMUST00000141892 701 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm25830-201ENSMUST00000158923 132 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm25677-201ENSMUST00000174983 72 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm13290-201ENSMUST00000177806 968 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Rhoc-205ENSMUST00000196817 877 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm20568-201ENSMUST00000197129 208 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Ccna1-204ENSMUST00000198320 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm9204-201ENSMUST00000212641 947 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Myl6-203ENSMUST00000217776 562 ntTSL 3 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm5178-201ENSMUST00000219380 898 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm1995-201ENSMUST00000220838 2602 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 AU016765-201ENSMUST00000097295 946 ntTSL 2 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Slc10a3-203ENSMUST00000114146 1902 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Glb1l-201ENSMUST00000113623 2339 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm14005-210ENSMUST00000225087 1413 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm13094-201ENSMUST00000117930 409 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm4917-201ENSMUST00000121452 650 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm40414-201ENSMUST00000197608 481 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm43249-201ENSMUST00000200464 458 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm31314-201ENSMUST00000201435 609 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm44605-201ENSMUST00000206892 949 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Gm7192-201ENSMUST00000210793 1137 ntBASIC13.43□□□□□ -0.26
Scn11aQ9R053 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Scn11aQ9R053 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Syngr4-202ENSMUST00000120299 722 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC13.42□□□□□ -0.26
Scn11aQ9R053 C330019F10Rik-201ENSMUST00000149428 459 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 2410002F23Rik-220ENSMUST00000191537 872 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Scn11aQ9R053 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Taar7f-201ENSMUST00000071691 1077 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Olfr700-201ENSMUST00000079936 951 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Scn11aQ9R053 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC13.42□□□□□ -0.26
Scn11aQ9R053 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC13.42□□□□□ -0.26
Scn11aQ9R053 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Scn11aQ9R053 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Scn11aQ9R053 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms