Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Gm43773-201ENSMUST00000198548 2162 ntBASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 AC165154.1-201ENSMUST00000226661 340 ntBASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 AC102368.1-201ENSMUST00000227161 892 ntBASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sf3b1Q99NB9 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Gm26134-201ENSMUST00000178484 110 ntBASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Gm37826-201ENSMUST00000195329 322 ntBASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Gm3793-201ENSMUST00000204973 672 ntBASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Gm17825-201ENSMUST00000206836 794 ntBASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Gm19046-201ENSMUST00000221263 1298 ntBASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 CT030170.2-201ENSMUST00000223267 126 ntBASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Ptprm-203ENSMUST00000224091 3773 ntBASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC12.21□□□□□ -0.45
Sf3b1Q99NB9 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Gm4900-201ENSMUST00000222046 1628 ntBASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Gm8146-201ENSMUST00000192106 1847 ntBASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Gm43242-201ENSMUST00000199507 1776 ntBASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC12.21□□□□□ -0.46
Sf3b1Q99NB9 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms