Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm43289-201ENSMUST00000200537 1475 ntBASIC13.86□□□□□ -0.19
Brf1Q8CFK2 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Brf1Q8CFK2 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Brf1Q8CFK2 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Brf1Q8CFK2 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gm15573-201ENSMUST00000119487 540 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gm15329-201ENSMUST00000121408 155 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gm15549-201ENSMUST00000121595 622 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Mup-ps26-201ENSMUST00000121751 202 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Mir6546-201ENSMUST00000184460 62 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gm43068-201ENSMUST00000201095 1273 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 AC154276.3-201ENSMUST00000227643 998 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Olfr584-201ENSMUST00000098210 964 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Gm10728-201ENSMUST00000194292 1829 ntBASIC13.85□□□□□ -0.19
Brf1Q8CFK2 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Gm2128-201ENSMUST00000108009 2560 ntBASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Gm21939-201ENSMUST00000221137 2773 ntBASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Gm4726-201ENSMUST00000135604 736 ntBASIC13.84□□□□□ -0.19
Brf1Q8CFK2 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Gm6019-201ENSMUST00000148369 736 ntBASIC13.84□□□□□ -0.19
Brf1Q8CFK2 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 AC159819.2-201ENSMUST00000216151 342 ntBASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Adgrv1-214ENSMUST00000224088 1492 ntBASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Brf1Q8CFK2 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Brf1Q8CFK2 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Brf1Q8CFK2 Gm12419-201ENSMUST00000116649 636 ntBASIC13.83□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms