Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Gm11331-201ENSMUST00000119764 288 ntBASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Gm43138-201ENSMUST00000199123 708 ntBASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Mir7686-201ENSMUST00000200604 57 ntBASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 AC154290.1-201ENSMUST00000223786 1240 ntBASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 AC164437.3-201ENSMUST00000228323 347 ntBASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 CT010447.1-201ENSMUST00000225657 1608 ntBASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 CT009489.1-201ENSMUST00000227740 1893 ntBASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Gm22711-201ENSMUST00000116890 133 ntBASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Gm15432-201ENSMUST00000121106 195 ntBASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Gm22144-201ENSMUST00000157402 102 ntBASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Gm20426-201ENSMUST00000173657 440 ntBASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Gm43966-201ENSMUST00000203301 612 ntBASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 AC118639.2-201ENSMUST00000226289 223 ntBASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 AC165351.1-201ENSMUST00000219078 2020 ntBASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Upf3bQ3ULL6 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 n-R5s64-201ENSMUST00000102019 119 ntBASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Gm13611-201ENSMUST00000118269 318 ntBASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms