Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Gm26013-201ENSMUST00000104404 119 ntBASIC11.08□□□□□ -0.64
Sox3P53784 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Sox3P53784 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC11.08□□□□□ -0.64
Sox3P53784 Gm11509-201ENSMUST00000117358 325 ntBASIC11.08□□□□□ -0.64
Sox3P53784 Gm13916-201ENSMUST00000117368 628 ntBASIC11.08□□□□□ -0.64
Sox3P53784 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC11.08□□□□□ -0.64
Sox3P53784 Ighv2-1-201ENSMUST00000170946 353 ntBASIC11.08□□□□□ -0.64
Sox3P53784 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC11.08□□□□□ -0.64
Sox3P53784 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC11.08□□□□□ -0.64
Sox3P53784 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC11.08□□□□□ -0.64
Sox3P53784 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC11.08□□□□□ -0.64
Sox3P53784 AC168279.1-201ENSMUST00000214611 382 ntBASIC11.08□□□□□ -0.64
Sox3P53784 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC11.08□□□□□ -0.64
Sox3P53784 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Sox3P53784 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Sox3P53784 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC11.08□□□□□ -0.64
Sox3P53784 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Sox3P53784 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Sox3P53784 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Sox3P53784 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Gm36987-201ENSMUST00000194704 2979 ntBASIC11.07□□□□□ -0.64
Sox3P53784 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC11.07□□□□□ -0.64
Sox3P53784 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC11.07□□□□□ -0.64
Sox3P53784 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC11.07□□□□□ -0.64
Sox3P53784 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC11.07□□□□□ -0.64
Sox3P53784 Gm5100-201ENSMUST00000195631 589 ntBASIC11.07□□□□□ -0.64
Sox3P53784 Gm43186-201ENSMUST00000198130 824 ntBASIC11.07□□□□□ -0.64
Sox3P53784 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC11.07□□□□□ -0.64
Sox3P53784 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC11.07□□□□□ -0.64
Sox3P53784 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Gm9072-201ENSMUST00000218390 1514 ntBASIC11.07□□□□□ -0.64
Sox3P53784 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC11.07□□□□□ -0.64
Sox3P53784 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC11.07□□□□□ -0.64
Sox3P53784 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Sox3P53784 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Sox3P53784 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC11.06□□□□□ -0.64
Sox3P53784 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC11.06□□□□□ -0.64
Sox3P53784 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.64
Sox3P53784 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Sox3P53784 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC11.06□□□□□ -0.64
Sox3P53784 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
Sox3P53784 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Sox3P53784 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Gm12218-201ENSMUST00000117666 399 ntBASIC11.06□□□□□ -0.64
Sox3P53784 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC11.06□□□□□ -0.64
Sox3P53784 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC11.06□□□□□ -0.64
Sox3P53784 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Sox3P53784 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC11.06□□□□□ -0.64
Sox3P53784 Gm17877-201ENSMUST00000192578 814 ntBASIC11.06□□□□□ -0.64
Sox3P53784 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC11.06□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 122.9 ms