Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC152169.1-201ENSMUST00000223901 701 ntBASIC17.43■□□□□ 0.38
Cux1P53564 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Ngp-201ENSMUST00000035061 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Cux1P53564 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
Cux1P53564 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Lonp2-207ENSMUST00000163987 1556 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC17.43■□□□□ 0.38
Cux1P53564 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Cux1P53564 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cux1P53564 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Cux1P53564 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 AC090962.2-201ENSMUST00000225064 1801 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Gm23745-201ENSMUST00000104230 125 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
Cux1P53564 Treml4-203ENSMUST00000136272 811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Treml4-206ENSMUST00000154335 838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Gm11942-201ENSMUST00000180255 345 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Gm7069-201ENSMUST00000182418 1008 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Sbsn-205ENSMUST00000182721 677 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
Cux1P53564 Gm40910-202ENSMUST00000223077 569 ntTSL 5 BASIC17.42■□□□□ 0.38
Cux1P53564 Olfr435-201ENSMUST00000058118 942 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Cux1P53564 Gm10580-201ENSMUST00000097985 396 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Gm10582-201ENSMUST00000097987 396 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Gm10583-201ENSMUST00000097988 396 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC17.42■□□□□ 0.38
Cux1P53564 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Cux1P53564 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Cux1P53564 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 AC124397.2-201ENSMUST00000225575 2215 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC17.42■□□□□ 0.38
Cux1P53564 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Snx27-208ENSMUST00000200642 1308 ntTSL 5 BASIC17.42■□□□□ 0.38
Cux1P53564 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Cux1P53564 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Gm13094-201ENSMUST00000117930 409 ntBASIC17.42■□□□□ 0.38
Cux1P53564 n-R5s130-201ENSMUST00000178128 119 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Gm24312-201ENSMUST00000178677 119 ntBASIC17.42■□□□□ 0.38
Cux1P53564 n-R5s106-201ENSMUST00000179060 119 ntBASIC17.42■□□□□ 0.38
Cux1P53564 n-R5s118-201ENSMUST00000179887 119 ntBASIC17.42■□□□□ 0.38
Cux1P53564 Eef1akmt1-201ENSMUST00000022518 880 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cux1P53564 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Cux1P53564 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC17.41■□□□□ 0.38
Cux1P53564 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Prss23os-202ENSMUST00000179361 1362 ntBASIC17.41■□□□□ 0.38
Cux1P53564 Gm38344-201ENSMUST00000195306 1353 ntBASIC17.41■□□□□ 0.38
Cux1P53564 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Cux1P53564 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Gm7168-201ENSMUST00000088809 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Psmc1-201ENSMUST00000021595 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Gm12426-201ENSMUST00000153083 371 ntTSL 5 BASIC17.41■□□□□ 0.38
Cux1P53564 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC17.41■□□□□ 0.38
Cux1P53564 Gm8384-201ENSMUST00000190905 704 ntBASIC17.41■□□□□ 0.38
Cux1P53564 Plet1os-202ENSMUST00000190941 1119 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Gm37207-201ENSMUST00000194284 296 ntBASIC17.41■□□□□ 0.38
Cux1P53564 Gm37723-201ENSMUST00000194480 565 ntBASIC17.41■□□□□ 0.38
Cux1P53564 Gm44498-201ENSMUST00000199509 111 ntBASIC17.41■□□□□ 0.38
Cux1P53564 Gm33080-201ENSMUST00000205429 172 ntBASIC17.41■□□□□ 0.38
Cux1P53564 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Cux1P53564 Rnasek-201ENSMUST00000040428 611 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Gm15984-202ENSMUST00000156466 1534 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cux1P53564 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
Cux1P53564 Gm43972-201ENSMUST00000181398 1467 ntBASIC17.4■□□□□ 0.38
Cux1P53564 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Cux1P53564 AC121805.2-201ENSMUST00000218808 2538 ntBASIC17.4■□□□□ 0.38
Cux1P53564 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cux1P53564 Gm43127-201ENSMUST00000195890 2789 ntBASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms