Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 Gm15132-201ENSMUST00000118581 652 ntBASIC14.85□□□□□ -0.03
Col18a1P39061 Slirp-202ENSMUST00000160488 802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 Fam240a-201ENSMUST00000177678 499 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Col18a1P39061 Gm26611-201ENSMUST00000181449 785 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 Gm16894-201ENSMUST00000181756 842 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 Trav18-202ENSMUST00000186573 325 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
Col18a1P39061 Gm7539-201ENSMUST00000189789 630 ntBASIC14.85□□□□□ -0.03
Col18a1P39061 Gm7047-201ENSMUST00000196224 1063 ntBASIC14.85□□□□□ -0.03
Col18a1P39061 Gm18122-201ENSMUST00000211390 904 ntBASIC14.85□□□□□ -0.03
Col18a1P39061 Gm36172-201ENSMUST00000219852 723 ntTSL 3 BASIC14.85□□□□□ -0.03
Col18a1P39061 Gm46376-201ENSMUST00000222653 654 ntTSL 3 BASIC14.85□□□□□ -0.03
Col18a1P39061 AC161172.1-201ENSMUST00000227801 486 ntBASIC14.85□□□□□ -0.03
Col18a1P39061 Calm4-201ENSMUST00000042219 917 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Col18a1P39061 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 4930447F24Rik-201ENSMUST00000194140 1341 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 AC156631.1-201ENSMUST00000215213 1358 ntTSL 5 BASIC14.85□□□□□ -0.03
Col18a1P39061 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Col18a1P39061 Theg-201ENSMUST00000020566 1444 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 Xaf1-204ENSMUST00000146233 2597 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Col18a1P39061 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col18a1P39061 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Col18a1P39061 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Col18a1P39061 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Col18a1P39061 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.84□□□□□ -0.03
Col18a1P39061 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Gm14153-201ENSMUST00000119923 1139 ntBASIC14.84□□□□□ -0.03
Col18a1P39061 Gm16193-201ENSMUST00000125903 778 ntTSL 3 BASIC14.84□□□□□ -0.03
Col18a1P39061 Gm11465-201ENSMUST00000127942 435 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Gm37885-202ENSMUST00000195868 685 ntTSL 3 BASIC14.84□□□□□ -0.03
Col18a1P39061 Gm10254-201ENSMUST00000052888 867 ntBASIC14.84□□□□□ -0.03
Col18a1P39061 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Col18a1P39061 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Col18a1P39061 Gm4925-202ENSMUST00000168843 1561 ntBASIC14.84□□□□□ -0.03
Col18a1P39061 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col18a1P39061 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col18a1P39061 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col18a1P39061 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col18a1P39061 Morf4l2-215ENSMUST00000169418 1782 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
Col18a1P39061 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
Col18a1P39061 Eddm3b-201ENSMUST00000100645 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col18a1P39061 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col18a1P39061 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col18a1P39061 Gm22751-201ENSMUST00000102077 109 ntBASIC14.83□□□□□ -0.03
Col18a1P39061 Mir692-3-201ENSMUST00000102079 109 ntBASIC14.83□□□□□ -0.03
Col18a1P39061 Mir692-2-201ENSMUST00000102081 109 ntBASIC14.83□□□□□ -0.03
Col18a1P39061 Dtymk-203ENSMUST00000112893 1040 ntTSL 2 BASIC14.83□□□□□ -0.03
Col18a1P39061 Gm12397-201ENSMUST00000117674 615 ntBASIC14.83□□□□□ -0.03
Col18a1P39061 Osgep-207ENSMUST00000162177 1219 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Col18a1P39061 Gm28809-201ENSMUST00000187542 782 ntTSL 5 BASIC14.83□□□□□ -0.03
Col18a1P39061 Gm37860-201ENSMUST00000195380 1034 ntBASIC14.83□□□□□ -0.03
Col18a1P39061 Gm34397-201ENSMUST00000213192 708 ntTSL 3 BASIC14.83□□□□□ -0.03
Col18a1P39061 Gm19090-201ENSMUST00000218187 774 ntBASIC14.83□□□□□ -0.03
Col18a1P39061 Fxyd1-201ENSMUST00000039909 620 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Col18a1P39061 Ifne-201ENSMUST00000056014 664 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
Col18a1P39061 Fdps-201ENSMUST00000081848 1237 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col18a1P39061 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Col18a1P39061 Dytn-201ENSMUST00000090313 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Gm20554-201ENSMUST00000177421 2352 ntBASIC14.83□□□□□ -0.04
Col18a1P39061 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Setmar-201ENSMUST00000049246 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
Col18a1P39061 Rps6-201ENSMUST00000102814 878 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Slc31a2-202ENSMUST00000107467 868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Klra9-202ENSMUST00000112032 1279 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Crygf-202ENSMUST00000114027 594 ntTSL 2 BASIC14.83□□□□□ -0.04
Col18a1P39061 Gm8864-201ENSMUST00000118653 1010 ntBASIC14.83□□□□□ -0.04
Col18a1P39061 Gm44805-201ENSMUST00000127648 765 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Col18a1P39061 Gm12688-201ENSMUST00000136525 701 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col18a1P39061 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms