Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usp4P35123 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Usp4P35123 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Gm14263-201ENSMUST00000117955 746 ntBASIC12.07□□□□□ -0.48
Usp4P35123 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC12.07□□□□□ -0.48
Usp4P35123 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 AC166359.1-201ENSMUST00000220243 1871 ntBASIC12.07□□□□□ -0.48
Usp4P35123 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Usp4P35123 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC12.07□□□□□ -0.48
Usp4P35123 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Usp4P35123 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 AC153380.1-201ENSMUST00000214959 2364 ntBASIC12.07□□□□□ -0.48
Usp4P35123 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Gm38187-201ENSMUST00000195609 4709 ntBASIC12.07□□□□□ -0.48
Usp4P35123 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
Usp4P35123 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Usp4P35123 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
Usp4P35123 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC12.06□□□□□ -0.48
Usp4P35123 Gm26660-202ENSMUST00000223620 4112 ntBASIC12.06□□□□□ -0.48
Usp4P35123 AC125409.1-201ENSMUST00000223213 3370 ntBASIC12.06□□□□□ -0.48
Usp4P35123 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Usp4P35123 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Usp4P35123 AC129336.1-201ENSMUST00000220224 2277 ntBASIC12.06□□□□□ -0.48
Usp4P35123 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC12.06□□□□□ -0.48
Usp4P35123 Gm14208-201ENSMUST00000119645 678 ntBASIC12.06□□□□□ -0.48
Usp4P35123 Gm4760-201ENSMUST00000119663 1030 ntBASIC12.06□□□□□ -0.48
Usp4P35123 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC12.06□□□□□ -0.48
Usp4P35123 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC12.06□□□□□ -0.48
Usp4P35123 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Uba52-ps-201ENSMUST00000183770 379 ntBASIC12.06□□□□□ -0.48
Usp4P35123 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Rprl1-202ENSMUST00000198476 238 ntBASIC12.06□□□□□ -0.48
Usp4P35123 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Usp4P35123 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC12.06□□□□□ -0.48
Usp4P35123 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC12.06□□□□□ -0.48
Usp4P35123 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Usp4P35123 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Usp4P35123 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Usp4P35123 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Usp4P35123 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Usp4P35123 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Usp4P35123 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms