Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC11.03□□□□□ -0.64
Lire1P11260 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.03□□□□□ -0.64
Lire1P11260 Gm12015-201ENSMUST00000117065 843 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm12616-201ENSMUST00000118594 382 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm14208-201ENSMUST00000119645 678 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC11.03□□□□□ -0.64
Lire1P11260 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Lire1P11260 Gm12624-201ENSMUST00000177615 382 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm25700-201ENSMUST00000177693 110 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm12621-201ENSMUST00000177760 382 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm12615-201ENSMUST00000177970 382 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm12622-201ENSMUST00000177975 382 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm12627-201ENSMUST00000178412 382 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm12625-201ENSMUST00000179122 382 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm12614-201ENSMUST00000179586 382 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Gm12613-201ENSMUST00000180323 382 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Gm45691-201ENSMUST00000206905 1120 ntBASIC11.03□□□□□ -0.64
Lire1P11260 AC107638.1-201ENSMUST00000213690 1061 ntBASIC11.03□□□□□ -0.64
Lire1P11260 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC11.03□□□□□ -0.64
Lire1P11260 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Gm29787-201ENSMUST00000222129 849 ntBASIC11.03□□□□□ -0.64
Lire1P11260 CT025694.1-201ENSMUST00000226188 934 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC11.03□□□□□ -0.64
Lire1P11260 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 AC131029.1-201ENSMUST00000226391 2929 ntBASIC11.03□□□□□ -0.64
Lire1P11260 Fam71e2-202ENSMUST00000174409 2716 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Lire1P11260 Blk-201ENSMUST00000014597 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Diablo-207ENSMUST00000145152 2588 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Pax6-225ENSMUST00000167211 2814 ntAPPRIS P3 TSL 5 BASIC11.03□□□□□ -0.64
Lire1P11260 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Lire1P11260 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Lire1P11260 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Lire1P11260 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Lire1P11260 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Lire1P11260 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC11.02□□□□□ -0.64
Lire1P11260 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC11.02□□□□□ -0.64
Lire1P11260 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Lire1P11260 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Sptb-202ENSMUST00000166101 8084 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Lire1P11260 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Lire1P11260 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC11.02□□□□□ -0.65
Lire1P11260 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Gm17040-202ENSMUST00000170597 889 ntBASIC11.02□□□□□ -0.65
Lire1P11260 Gm5523-201ENSMUST00000180415 997 ntBASIC11.02□□□□□ -0.65
Lire1P11260 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC11.02□□□□□ -0.65
Lire1P11260 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC11.02□□□□□ -0.65
Lire1P11260 Gm44262-201ENSMUST00000204969 372 ntBASIC11.02□□□□□ -0.65
Lire1P11260 Gm10109-202ENSMUST00000206890 1211 ntBASIC11.02□□□□□ -0.65
Lire1P11260 Gm45433-201ENSMUST00000209386 247 ntBASIC11.02□□□□□ -0.65
Lire1P11260 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC11.02□□□□□ -0.65
Lire1P11260 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Lire1P11260 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC11.02□□□□□ -0.65
Lire1P11260 Cdk5rap1-201ENSMUST00000028990 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Idua-202ENSMUST00000112563 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Gm21986-201ENSMUST00000113671 5560 ntTSL 2 BASIC11.02□□□□□ -0.65
Lire1P11260 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.02□□□□□ -0.65
Lire1P11260 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Ntrk3-206ENSMUST00000195262 2774 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Lire1P11260 Apobec4-201ENSMUST00000068875 1566 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Lire1P11260 Cbfa2t3-203ENSMUST00000127984 7645 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Rapgef4os2-201ENSMUST00000128165 2116 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Lire1P11260 Chml-204ENSMUST00000211207 1866 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Lire1P11260 Rims2-204ENSMUST00000226410 3685 ntBASIC11.02□□□□□ -0.65
Lire1P11260 Gdi1-201ENSMUST00000015435 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 72.4 ms