Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Scn11aQ9R053 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Scn11aQ9R053 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Scn11aQ9R053 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Gm3642-201ENSMUST00000166895 1762 ntAPPRIS P5 TSL 5 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Wfdc3-202ENSMUST00000109328 726 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Gm14234-201ENSMUST00000119539 845 ntBASIC13.46□□□□□ -0.25
Scn11aQ9R053 Mir1893-201ENSMUST00000122565 83 ntBASIC13.46□□□□□ -0.25
Scn11aQ9R053 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Gm24078-201ENSMUST00000158184 103 ntBASIC13.46□□□□□ -0.25
Scn11aQ9R053 Gm6358-202ENSMUST00000187643 489 ntAPPRIS P5 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Gm20781-201ENSMUST00000193154 693 ntBASIC13.46□□□□□ -0.25
Scn11aQ9R053 Gm21736-201ENSMUST00000195399 693 ntBASIC13.46□□□□□ -0.25
Scn11aQ9R053 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Gm45094-201ENSMUST00000207013 617 ntBASIC13.46□□□□□ -0.25
Scn11aQ9R053 BC049987-201ENSMUST00000213859 918 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Scn11aQ9R053 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Scn11aQ9R053 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm12986-201ENSMUST00000119037 967 ntBASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Platr10-202ENSMUST00000191479 818 ntBASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm43564-201ENSMUST00000196185 211 ntBASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 4930447C11Rik-201ENSMUST00000204503 928 ntBASIC13.45□□□□□ -0.26
Scn11aQ9R053 Timm9-210ENSMUST00000221892 734 ntTSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Magea2-202ENSMUST00000112559 1302 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm25226-201ENSMUST00000158198 123 ntBASIC13.45□□□□□ -0.26
Scn11aQ9R053 Snord55-201ENSMUST00000174939 79 ntBASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm27826-201ENSMUST00000175282 255 ntBASIC13.45□□□□□ -0.26
Scn11aQ9R053 Gm38324-201ENSMUST00000194390 411 ntTSL 3 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Mustn1-201ENSMUST00000040715 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Try5-201ENSMUST00000064324 801 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Olfr63-201ENSMUST00000067840 955 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Impdh2-ps-201ENSMUST00000120826 1545 ntBASIC13.45□□□□□ -0.26
Scn11aQ9R053 Triml2-202ENSMUST00000209200 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Scn11aQ9R053 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Schip1-202ENSMUST00000169909 1517 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Gm12418-201ENSMUST00000118116 942 ntBASIC13.44□□□□□ -0.26
Scn11aQ9R053 Atad3aos-202ENSMUST00000150777 650 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Gm17221-201ENSMUST00000163909 481 ntBASIC13.44□□□□□ -0.26
Scn11aQ9R053 Gm17073-201ENSMUST00000168069 556 ntBASIC13.44□□□□□ -0.26
Scn11aQ9R053 Marc1-203ENSMUST00000189492 1239 ntTSL 5 BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Gm18123-201ENSMUST00000210874 822 ntBASIC13.44□□□□□ -0.26
Scn11aQ9R053 Gm7183-201ENSMUST00000213870 1005 ntBASIC13.44□□□□□ -0.26
Scn11aQ9R053 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC13.44□□□□□ -0.26
Scn11aQ9R053 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Scn11aQ9R053 Gm5739-201ENSMUST00000208601 1703 ntBASIC13.44□□□□□ -0.26
Scn11aQ9R053 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms