Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Tgfb1i1-201ENSMUST00000070656 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Myom2-201ENSMUST00000033842 5075 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 C4b-201ENSMUST00000069507 5379 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Zfp174-201ENSMUST00000041778 5897 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Gm20482-202ENSMUST00000174729 825 ntBASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Gm19187-201ENSMUST00000206781 892 ntBASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 AC153929.1-201ENSMUST00000219009 303 ntBASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Pcdhb19-201ENSMUST00000059571 7138 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Ap3b2-205ENSMUST00000152355 3168 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ddx28Q9CWT6 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.67
Ddx28Q9CWT6 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Gm45428-201ENSMUST00000209619 1789 ntBASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Spata33-207ENSMUST00000212760 4074 ntBASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Olfr46-203ENSMUST00000214180 7750 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Gm14109-201ENSMUST00000118814 309 ntBASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Gm12164-201ENSMUST00000121695 551 ntBASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Gm44415-201ENSMUST00000204151 2112 ntBASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 C330027C09Rik-202ENSMUST00000117994 3977 ntTSL 5 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Gm37660-201ENSMUST00000192754 1732 ntBASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Hepacam-201ENSMUST00000051839 3347 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Ddx28Q9CWT6 Gm43267-201ENSMUST00000199664 1796 ntBASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gramd1b-213ENSMUST00000211853 2659 ntTSL 5 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Dysf-211ENSMUST00000168387 6501 ntTSL 5 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 AC138329.2-201ENSMUST00000225579 1842 ntBASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Adcy8-202ENSMUST00000228014 6900 ntAPPRIS ALT2 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Gm24255-201ENSMUST00000104481 128 ntBASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Ddx28Q9CWT6 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms