Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3bQ3ULL6 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.43
Upf3bQ3ULL6 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Upf3bQ3ULL6 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Upf3bQ3ULL6 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm42498-201ENSMUST00000199981 1372 ntBASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm22920-201ENSMUST00000102175 109 ntBASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm7666-201ENSMUST00000146631 819 ntBASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm24844-201ENSMUST00000158679 127 ntBASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm20495-201ENSMUST00000173902 235 ntBASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Mir6979-201ENSMUST00000183927 56 ntBASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm44506-201ENSMUST00000206278 965 ntBASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm43289-201ENSMUST00000200537 1475 ntBASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3bQ3ULL6 Gm2128-201ENSMUST00000108009 2560 ntBASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gm44190-201ENSMUST00000205083 1401 ntBASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gm7150-201ENSMUST00000122032 981 ntBASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gm34767-201ENSMUST00000191813 1062 ntBASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gm44755-201ENSMUST00000207830 2102 ntBASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gm17230-201ENSMUST00000171194 3942 ntBASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Erich3-203ENSMUST00000189969 3460 ntBASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
Upf3bQ3ULL6 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Gm14150-201ENSMUST00000122404 1354 ntBASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Upf3bQ3ULL6 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms