Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox1P53783 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Sox1P53783 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Sox1P53783 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC11.81□□□□□ -0.52
Sox1P53783 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Igll1-201ENSMUST00000100136 870 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Sox1P53783 Mir598-201ENSMUST00000102094 79 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Meig1-202ENSMUST00000115081 421 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Sox1P53783 Gm11544-201ENSMUST00000120215 382 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Rps18-ps1-201ENSMUST00000120838 459 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC11.81□□□□□ -0.52
Sox1P53783 Gm11365-201ENSMUST00000144277 774 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Gm23958-201ENSMUST00000157207 105 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Gm17782-201ENSMUST00000174345 880 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Mir7051-201ENSMUST00000184167 73 ntBASIC11.81□□□□□ -0.52
Sox1P53783 1700019D03Rik-205ENSMUST00000190726 702 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Sox1P53783 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Gm43117-201ENSMUST00000198531 379 ntBASIC11.81□□□□□ -0.52
Sox1P53783 3930402G23Rik-202ENSMUST00000208615 581 ntTSL 3 BASIC11.81□□□□□ -0.52
Sox1P53783 Mt1-203ENSMUST00000212291 633 ntTSL 2 BASIC11.81□□□□□ -0.52
Sox1P53783 AC134913.2-201ENSMUST00000225017 771 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Cxcl10-201ENSMUST00000038816 1094 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Defb29-201ENSMUST00000060598 462 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Ttc24-202ENSMUST00000064550 671 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 n-R5s71-201ENSMUST00000093668 119 ntBASIC11.81□□□□□ -0.52
Sox1P53783 AC137842.1-201ENSMUST00000227896 2064 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Gm5939-201ENSMUST00000119613 2874 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Gm37861-201ENSMUST00000193534 2869 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
Sox1P53783 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Sox1P53783 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Gm9947-201ENSMUST00000067599 2920 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Sox1P53783 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Teddm3-201ENSMUST00000170665 1346 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Sox1P53783 Gm17836-201ENSMUST00000191976 1302 ntBASIC11.81□□□□□ -0.52
Sox1P53783 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Sox1P53783 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox1P53783 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Deup1-201ENSMUST00000045513 2583 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Sox1P53783 AC158777.1-201ENSMUST00000226216 1724 ntBASIC11.8□□□□□ -0.52
Sox1P53783 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
Sox1P53783 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
Sox1P53783 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC11.8□□□□□ -0.52
Sox1P53783 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Gm22661-201ENSMUST00000104192 132 ntBASIC11.8□□□□□ -0.52
Sox1P53783 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Sox1P53783 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC11.8□□□□□ -0.52
Sox1P53783 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Gm13426-201ENSMUST00000117887 795 ntBASIC11.8□□□□□ -0.52
Sox1P53783 Gm11473-201ENSMUST00000118980 359 ntBASIC11.8□□□□□ -0.52
Sox1P53783 Gm15329-201ENSMUST00000121408 155 ntBASIC11.8□□□□□ -0.52
Sox1P53783 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC11.8□□□□□ -0.52
Sox1P53783 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Pdc-201ENSMUST00000165062 1246 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Sox1P53783 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC11.8□□□□□ -0.52
Sox1P53783 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Sox1P53783 Ighv5-1-201ENSMUST00000193324 353 ntBASIC11.8□□□□□ -0.52
Sox1P53783 Gm7815-201ENSMUST00000196104 832 ntBASIC11.8□□□□□ -0.52
Sox1P53783 BB187690-201ENSMUST00000198619 1176 ntBASIC11.8□□□□□ -0.52
Sox1P53783 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Sox1P53783 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC11.8□□□□□ -0.52
Sox1P53783 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Sox1P53783 Gm4032-203ENSMUST00000211600 531 ntTSL 3 BASIC11.8□□□□□ -0.52
Sox1P53783 Gm29689-201ENSMUST00000221076 589 ntBASIC11.8□□□□□ -0.52
Sox1P53783 AC115304.2-201ENSMUST00000226399 332 ntBASIC11.8□□□□□ -0.52
Sox1P53783 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox1P53783 Olfr1394-201ENSMUST00000052668 939 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms