Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC13.38□□□□□ -0.27
Traf1P39428 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC13.38□□□□□ -0.27
Traf1P39428 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Gm5778-201ENSMUST00000171003 1072 ntBASIC13.38□□□□□ -0.27
Traf1P39428 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Traf1P39428 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC13.38□□□□□ -0.27
Traf1P39428 Gm17877-201ENSMUST00000192578 814 ntBASIC13.38□□□□□ -0.27
Traf1P39428 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Gm9661-201ENSMUST00000221611 1122 ntBASIC13.38□□□□□ -0.27
Traf1P39428 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC13.38□□□□□ -0.27
Traf1P39428 CT009546.1-201ENSMUST00000222573 1120 ntBASIC13.38□□□□□ -0.27
Traf1P39428 AC166344.1-201ENSMUST00000223745 674 ntBASIC13.38□□□□□ -0.27
Traf1P39428 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Traf1P39428 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Traf1P39428 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Traf1P39428 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Traf1P39428 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC13.37□□□□□ -0.27
Traf1P39428 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Gm23272-201ENSMUST00000104053 129 ntBASIC13.37□□□□□ -0.27
Traf1P39428 Gm25076-201ENSMUST00000104098 132 ntBASIC13.37□□□□□ -0.27
Traf1P39428 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Traf1P39428 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC13.37□□□□□ -0.27
Traf1P39428 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC13.37□□□□□ -0.27
Traf1P39428 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC13.37□□□□□ -0.27
Traf1P39428 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC13.37□□□□□ -0.27
Traf1P39428 Gm43520-201ENSMUST00000197996 164 ntBASIC13.37□□□□□ -0.27
Traf1P39428 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Gm18065-201ENSMUST00000221395 526 ntBASIC13.37□□□□□ -0.27
Traf1P39428 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC13.37□□□□□ -0.27
Traf1P39428 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 AC166836.1-201ENSMUST00000219933 1795 ntBASIC13.37□□□□□ -0.27
Traf1P39428 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC13.37□□□□□ -0.27
Traf1P39428 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Traf1P39428 AC169511.2-201ENSMUST00000226674 2063 ntBASIC13.36□□□□□ -0.27
Traf1P39428 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC13.36□□□□□ -0.27
Traf1P39428 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Traf1P39428 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC13.36□□□□□ -0.27
Traf1P39428 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 AC211878.3-201ENSMUST00000222629 2018 ntBASIC13.36□□□□□ -0.27
Traf1P39428 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Traf1P39428 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC13.36□□□□□ -0.27
Traf1P39428 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Traf1P39428 Gm12419-201ENSMUST00000116649 636 ntBASIC13.36□□□□□ -0.27
Traf1P39428 Gm12247-201ENSMUST00000117585 670 ntBASIC13.36□□□□□ -0.27
Traf1P39428 Gm11700-201ENSMUST00000119409 403 ntBASIC13.36□□□□□ -0.27
Traf1P39428 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Gm8194-201ENSMUST00000159783 859 ntBASIC13.36□□□□□ -0.27
Traf1P39428 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Traf1P39428 Gm44315-201ENSMUST00000203041 219 ntBASIC13.36□□□□□ -0.27
Traf1P39428 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms