Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
Sdc1P18828 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC9.38□□□□□ -0.91
Sdc1P18828 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Gm18187-201ENSMUST00000196476 984 ntBASIC9.38□□□□□ -0.91
Sdc1P18828 AC159896.2-201ENSMUST00000214753 269 ntBASIC9.38□□□□□ -0.91
Sdc1P18828 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC9.38□□□□□ -0.91
Sdc1P18828 Sema4g-203ENSMUST00000179305 4290 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 F730311O21Rik-201ENSMUST00000189288 5447 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Psd3-213ENSMUST00000212505 3253 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
Sdc1P18828 Nup210-202ENSMUST00000113509 6893 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Ccdc62-202ENSMUST00000165148 3920 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Sdc1P18828 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC9.38□□□□□ -0.91
Sdc1P18828 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Nhsl1-202ENSMUST00000100054 6795 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
Sdc1P18828 Furin-202ENSMUST00000120753 4332 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Sdc1P18828 Ankrd31-203ENSMUST00000208758 5859 ntTSL 5 BASIC9.38□□□□□ -0.91
Sdc1P18828 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC9.38□□□□□ -0.91
Sdc1P18828 Sf3b5-201ENSMUST00000105139 3841 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
Sdc1P18828 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC9.38□□□□□ -0.91
Sdc1P18828 2610005L07Rik-202ENSMUST00000140111 4009 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Gm7598-201ENSMUST00000130251 3123 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Cadm2-201ENSMUST00000114292 9564 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Vwa7-202ENSMUST00000172499 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Trim25-201ENSMUST00000000284 5566 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 AU041133-202ENSMUST00000201286 2634 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Pgf-201ENSMUST00000004913 1582 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC9.37□□□□□ -0.91
Sdc1P18828 Igsf6-201ENSMUST00000047194 2175 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Cmya5-201ENSMUST00000062122 11850 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Ppp2r2a-201ENSMUST00000089230 4010 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Elovl5-201ENSMUST00000034904 2782 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Atad5-202ENSMUST00000108239 7266 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
Sdc1P18828 Gm44663-201ENSMUST00000206898 3150 ntBASIC9.37□□□□□ -0.91
Sdc1P18828 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
Sdc1P18828 Oxsm-201ENSMUST00000022311 3759 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Zbtb25-202ENSMUST00000176102 2707 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Sdc1P18828 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Sdc1P18828 Fam184b-201ENSMUST00000016023 4236 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC9.37□□□□□ -0.91
Sdc1P18828 Gm12203-201ENSMUST00000118235 598 ntBASIC9.37□□□□□ -0.91
Sdc1P18828 Gm12209-201ENSMUST00000120089 596 ntBASIC9.37□□□□□ -0.91
Sdc1P18828 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC9.37□□□□□ -0.91
Sdc1P18828 Mir7684-201ENSMUST00000183858 60 ntBASIC9.37□□□□□ -0.91
Sdc1P18828 Gm5370-201ENSMUST00000187187 574 ntBASIC9.37□□□□□ -0.91
Sdc1P18828 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Sdc1P18828 Gm18539-201ENSMUST00000204745 1090 ntBASIC9.37□□□□□ -0.91
Sdc1P18828 AC156501.1-201ENSMUST00000228219 270 ntBASIC9.37□□□□□ -0.91
Sdc1P18828 AC135114.1-201ENSMUST00000228682 270 ntBASIC9.37□□□□□ -0.91
Sdc1P18828 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Aen-203ENSMUST00000107425 4956 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Trp73-205ENSMUST00000133533 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Cabin1-201ENSMUST00000001712 7417 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Sdc1P18828 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Acot11-202ENSMUST00000102762 5689 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Ctnnd1-223ENSMUST00000111697 5294 ntTSL 5 BASIC9.37□□□□□ -0.91
Sdc1P18828 Erbb3-201ENSMUST00000082059 6016 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Setmar-201ENSMUST00000049246 1612 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Snapc1-201ENSMUST00000021532 6275 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Cacna2d1-204ENSMUST00000115281 3412 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Slc5a9-201ENSMUST00000102719 2460 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Itgad-202ENSMUST00000106237 4105 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Sdc1P18828 Nrap-202ENSMUST00000073536 5501 ntAPPRIS P4 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Olfr463-202ENSMUST00000215150 2031 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
Sdc1P18828 Pcdh11x-202ENSMUST00000113358 8607 ntAPPRIS P2 TSL 5 BASIC9.36□□□□□ -0.91
Sdc1P18828 Rnf121-203ENSMUST00000106953 2545 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Gm38192-201ENSMUST00000194364 1847 ntBASIC9.36□□□□□ -0.91
Sdc1P18828 Specc1-214ENSMUST00000202389 3363 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Sdc1P18828 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC9.36□□□□□ -0.91
Sdc1P18828 Gm5766-201ENSMUST00000160520 1977 ntBASIC9.36□□□□□ -0.91
Sdc1P18828 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Sez6l-205ENSMUST00000212480 5857 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Sdc1P18828 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Gm5419-201ENSMUST00000119301 527 ntBASIC9.36□□□□□ -0.91
Sdc1P18828 Mir1896-201ENSMUST00000122641 81 ntBASIC9.36□□□□□ -0.91
Sdc1P18828 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC9.36□□□□□ -0.91
Sdc1P18828 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC9.36□□□□□ -0.91
Sdc1P18828 Gm8810-201ENSMUST00000172895 754 ntBASIC9.36□□□□□ -0.91
Sdc1P18828 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC9.36□□□□□ -0.91
Sdc1P18828 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Sdc1P18828 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC9.36□□□□□ -0.91
Sdc1P18828 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC9.36□□□□□ -0.91
Sdc1P18828 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC9.36□□□□□ -0.91
Sdc1P18828 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Sdc1P18828 AC133598.3-202ENSMUST00000224219 531 ntBASIC9.36□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms