Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col1a1P11087 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Gm13171-201ENSMUST00000117233 391 ntBASIC13.37□□□□□ -0.27
Col1a1P11087 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC13.37□□□□□ -0.27
Col1a1P11087 Psme1-208ENSMUST00000174259 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Prm2-202ENSMUST00000189593 674 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col1a1P11087 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Gm18010-201ENSMUST00000203553 202 ntBASIC13.37□□□□□ -0.27
Col1a1P11087 Gm39091-201ENSMUST00000206189 553 ntTSL 2 BASIC13.37□□□□□ -0.27
Col1a1P11087 Calca-207ENSMUST00000206853 720 ntTSL 2 BASIC13.37□□□□□ -0.27
Col1a1P11087 Gm9204-201ENSMUST00000212641 947 ntBASIC13.37□□□□□ -0.27
Col1a1P11087 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Col1a1P11087 Gm6478-201ENSMUST00000099450 742 ntBASIC13.37□□□□□ -0.27
Col1a1P11087 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 A230009B12Rik-202ENSMUST00000159602 1810 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC13.37□□□□□ -0.27
Col1a1P11087 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Col1a1P11087 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Gm38042-201ENSMUST00000191614 5208 ntBASIC13.37□□□□□ -0.27
Col1a1P11087 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col1a1P11087 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col1a1P11087 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Col1a1P11087 Hyal3-201ENSMUST00000040059 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Ankrd7-202ENSMUST00000115396 1157 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm8019-201ENSMUST00000119317 587 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm3329-201ENSMUST00000159873 556 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Ppy-202ENSMUST00000170554 487 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Rpl41-201ENSMUST00000176010 582 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Rpl41-204ENSMUST00000176906 509 ntAPPRIS ALT2 TSL 3 BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm8756-201ENSMUST00000183250 929 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Mir6953-201ENSMUST00000184745 68 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm43244-201ENSMUST00000196994 1285 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC13.36□□□□□ -0.27
Col1a1P11087 CT025531.1-201ENSMUST00000214534 622 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 CT025603.1-201ENSMUST00000224040 448 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 AC164099.1-201ENSMUST00000227780 333 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Olfr63-201ENSMUST00000067840 955 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm5513-201ENSMUST00000072982 1218 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Prss23os-202ENSMUST00000179361 1362 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Col1a1P11087 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC13.36□□□□□ -0.27
Col1a1P11087 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm9947-201ENSMUST00000067599 2920 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC13.36□□□□□ -0.27
Col1a1P11087 Olfr171-202ENSMUST00000205467 1406 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
Col1a1P11087 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Col1a1P11087 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Col1a1P11087 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC13.36□□□□□ -0.27
Col1a1P11087 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm6758-201ENSMUST00000119643 1055 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Gm11952-201ENSMUST00000121172 821 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC13.36□□□□□ -0.27
Col1a1P11087 Gm25872-201ENSMUST00000177784 100 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Ighv5-8-202ENSMUST00000191967 337 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Gm19918-201ENSMUST00000194858 400 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Gm43365-201ENSMUST00000196522 2106 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Gm42867-201ENSMUST00000202995 469 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Timm9-210ENSMUST00000221892 734 ntTSL 5 BASIC13.36□□□□□ -0.27
Col1a1P11087 AC154759.1-201ENSMUST00000224137 1159 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Lect2-202ENSMUST00000225183 823 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 AC154407.1-201ENSMUST00000226777 526 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Gm9244-201ENSMUST00000056767 2129 ntBASIC13.36□□□□□ -0.27
Col1a1P11087 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col1a1P11087 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Col1a1P11087 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms