Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Gm8343-201ENSMUST00000182705 994 ntBASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Gm43184-201ENSMUST00000197247 542 ntBASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Gm8956-201ENSMUST00000203939 825 ntBASIC10.9□□□□□ -0.66
Trim3Q9R1R2 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim3Q9R1R2 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Trim3Q9R1R2 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC10.9□□□□□ -0.67
Trim3Q9R1R2 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Trim3Q9R1R2 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Trim3Q9R1R2 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.67
Trim3Q9R1R2 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Trim3Q9R1R2 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC10.89□□□□□ -0.67
Trim3Q9R1R2 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm18734-201ENSMUST00000172937 808 ntBASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm4157-201ENSMUST00000211647 679 ntBASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm43760-201ENSMUST00000202120 3015 ntBASIC10.89□□□□□ -0.67
Trim3Q9R1R2 AC129931.1-201ENSMUST00000228865 1861 ntBASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Gm43963-201ENSMUST00000203466 2488 ntBASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC10.89□□□□□ -0.67
Trim3Q9R1R2 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Gm18986-201ENSMUST00000216029 1986 ntBASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Gm23596-201ENSMUST00000104304 132 ntBASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC10.88□□□□□ -0.67
Trim3Q9R1R2 Gm14441-201ENSMUST00000121960 540 ntBASIC10.88□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms