Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 AC154314.2-201ENSMUST00000223677 3502 ntBASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Trim39Q9ESN2 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Tor1aip2-201ENSMUST00000060404 5135 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Vrk1-204ENSMUST00000220629 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm14381-201ENSMUST00000122105 414 ntBASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Rprl1-201ENSMUST00000158050 327 ntBASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Phf11b-201ENSMUST00000166121 1184 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Tcrg-C4-201ENSMUST00000179181 985 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm43758-201ENSMUST00000199500 367 ntBASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm34272-201ENSMUST00000208886 253 ntBASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Olfr1233-204ENSMUST00000216561 1192 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 AC122371.3-201ENSMUST00000223402 1061 ntBASIC10.91□□□□□ -0.66
Trim39Q9ESN2 AC163667.3-201ENSMUST00000225774 222 ntBASIC10.91□□□□□ -0.66
Trim39Q9ESN2 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Raver1-201ENSMUST00000115487 3470 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Bcl9l-203ENSMUST00000218183 6771 ntAPPRIS P2 TSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Trim39Q9ESN2 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Gm18782-201ENSMUST00000209023 1399 ntBASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Edil3-202ENSMUST00000081769 5317 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Gm11930-201ENSMUST00000117788 190 ntBASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Gm12249-201ENSMUST00000132323 719 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Gm4214-201ENSMUST00000174451 960 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Gm18711-201ENSMUST00000199341 750 ntBASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Gm19994-201ENSMUST00000217086 586 ntBASIC10.9□□□□□ -0.66
Trim39Q9ESN2 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC10.9□□□□□ -0.66
Trim39Q9ESN2 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Ccdc54-201ENSMUST00000062439 1296 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Trim39Q9ESN2 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC10.9□□□□□ -0.67
Trim39Q9ESN2 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Trim39Q9ESN2 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms