Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Gm2128-201ENSMUST00000108009 2560 ntBASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx56Q9D0R4 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm44190-201ENSMUST00000205083 1401 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm13035-201ENSMUST00000117496 342 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm7857-201ENSMUST00000117957 358 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm20495-201ENSMUST00000173902 235 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm29164-201ENSMUST00000185454 1024 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm18056-201ENSMUST00000207670 568 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm18061-201ENSMUST00000208350 562 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm18063-201ENSMUST00000208529 568 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm18052-201ENSMUST00000208750 559 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 CT009713.8-202ENSMUST00000224732 385 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gm7993-201ENSMUST00000200970 1384 ntBASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC12.15□□□□□ -0.46
Ddx56Q9D0R4 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
Ddx56Q9D0R4 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC12.15□□□□□ -0.47
Ddx56Q9D0R4 CT010447.1-201ENSMUST00000225657 1608 ntBASIC12.15□□□□□ -0.47
Ddx56Q9D0R4 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gripap1-203ENSMUST00000115675 3015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gm14058-201ENSMUST00000116082 735 ntBASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gm15236-201ENSMUST00000117309 379 ntBASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gm8459-201ENSMUST00000162504 760 ntBASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx56Q9D0R4 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC12.13□□□□□ -0.47
Ddx56Q9D0R4 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms