Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 AC122860.2-201ENSMUST00000217967 2671 ntBASIC12.79□□□□□ -0.36
Col6a1Q04857 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col6a1Q04857 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.79□□□□□ -0.36
Col6a1Q04857 Gm37131-201ENSMUST00000192502 1561 ntBASIC12.79□□□□□ -0.36
Col6a1Q04857 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col6a1Q04857 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col6a1Q04857 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Gm14213-201ENSMUST00000119778 768 ntBASIC12.79□□□□□ -0.36
Col6a1Q04857 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC12.79□□□□□ -0.36
Col6a1Q04857 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC12.79□□□□□ -0.36
Col6a1Q04857 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC12.79□□□□□ -0.36
Col6a1Q04857 Gm5700-201ENSMUST00000191483 989 ntBASIC12.79□□□□□ -0.36
Col6a1Q04857 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Col6a1Q04857 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC12.79□□□□□ -0.36
Col6a1Q04857 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC12.79□□□□□ -0.36
Col6a1Q04857 BC106175-202ENSMUST00000219344 1213 ntBASIC12.79□□□□□ -0.36
Col6a1Q04857 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col6a1Q04857 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC12.79□□□□□ -0.36
Col6a1Q04857 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col6a1Q04857 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Cog3-203ENSMUST00000227473 4197 ntBASIC12.79□□□□□ -0.36
Col6a1Q04857 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a1Q04857 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 AC126262.1-201ENSMUST00000221802 1904 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.78□□□□□ -0.36
Col6a1Q04857 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm43174-201ENSMUST00000195914 2445 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm12274-201ENSMUST00000120062 385 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm22379-201ENSMUST00000157480 131 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm45113-201ENSMUST00000207518 165 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm45592-201ENSMUST00000209605 1043 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm7082-201ENSMUST00000209880 969 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm45527-201ENSMUST00000211052 774 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm30671-201ENSMUST00000214898 318 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.78□□□□□ -0.36
Col6a1Q04857 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a1Q04857 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Col6a1Q04857 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms