Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC9.4□□□□□ -0.9
Sdc1P18828 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC9.4□□□□□ -0.9
Sdc1P18828 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC9.4□□□□□ -0.9
Sdc1P18828 Gm5904-201ENSMUST00000210286 865 ntBASIC9.4□□□□□ -0.9
Sdc1P18828 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.9
Sdc1P18828 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Sdc1P18828 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
Sdc1P18828 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.9
Sdc1P18828 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC9.4□□□□□ -0.9
Sdc1P18828 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC9.4□□□□□ -0.9
Sdc1P18828 Gal3st2b-202ENSMUST00000178757 2722 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Sdc1P18828 Abca9-201ENSMUST00000044850 6384 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Sdc1P18828 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Sdc1P18828 Scamp1-203ENSMUST00000152555 1877 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Sdc1P18828 Tgfbrap1-201ENSMUST00000095014 5607 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Sdc1P18828 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.91
Sdc1P18828 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC9.4□□□□□ -0.91
Sdc1P18828 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.91
Sdc1P18828 Sez6l-202ENSMUST00000079491 5857 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
Sdc1P18828 Gm38357-201ENSMUST00000195382 2464 ntBASIC9.4□□□□□ -0.91
Sdc1P18828 Cenpj-203ENSMUST00000225951 4756 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
Sdc1P18828 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Sdc1P18828 Dzip1l-204ENSMUST00000112886 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Mdm1-203ENSMUST00000164077 2922 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Gm14150-201ENSMUST00000122404 1354 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Ddx21-201ENSMUST00000045866 4722 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Gckr-202ENSMUST00000201166 2272 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Tmem130-201ENSMUST00000061446 2805 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Pygl-201ENSMUST00000071250 2825 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 CT010462.1-202ENSMUST00000222225 2225 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Adra1a-202ENSMUST00000159068 4282 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
Sdc1P18828 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC9.39□□□□□ -0.91
Sdc1P18828 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Sdc1P18828 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC9.39□□□□□ -0.91
Sdc1P18828 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC9.39□□□□□ -0.91
Sdc1P18828 Gm13736-201ENSMUST00000119272 253 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 Gm11573-201ENSMUST00000119956 394 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 Gm14719-201ENSMUST00000121891 340 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC9.39□□□□□ -0.91
Sdc1P18828 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Dhx34-207ENSMUST00000163968 3801 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Gramd1b-212ENSMUST00000165104 3824 ntAPPRIS P2 TSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Gm9192-201ENSMUST00000183221 985 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Sdc1P18828 Gm9124-201ENSMUST00000191789 1092 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 Gm9113-201ENSMUST00000192510 1018 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 Gm9131-201ENSMUST00000193557 1089 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 Gm9121-201ENSMUST00000193749 1071 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC9.39□□□□□ -0.91
Sdc1P18828 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Tro-203ENSMUST00000112709 6610 ntAPPRIS P3 TSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Exoc7-202ENSMUST00000106411 3205 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Ifi211-201ENSMUST00000009340 1785 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Cped1-201ENSMUST00000115382 2002 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Sdc1P18828 AA474408-201ENSMUST00000098110 3339 ntBASIC9.39□□□□□ -0.91
Sdc1P18828 Gripap1-203ENSMUST00000115675 3015 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Kcnip3-203ENSMUST00000103215 2732 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Kcnip3-201ENSMUST00000028850 2728 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Sdc1P18828 Acacb-202ENSMUST00000102582 8788 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Sdc1P18828 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Ccdc148-204ENSMUST00000226455 4612 ntAPPRIS ALT2 BASIC9.38□□□□□ -0.91
Sdc1P18828 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 AC107453.4-201ENSMUST00000227068 1817 ntBASIC9.38□□□□□ -0.91
Sdc1P18828 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Scn5a-203ENSMUST00000120420 7536 ntAPPRIS ALT1 TSL 5 BASIC9.38□□□□□ -0.91
Sdc1P18828 Gm43143-201ENSMUST00000196083 2023 ntBASIC9.38□□□□□ -0.91
Sdc1P18828 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Slc7a1-201ENSMUST00000048116 7179 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Cd2bp2-203ENSMUST00000205316 2912 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Sdc1P18828 Zdhhc21-201ENSMUST00000030110 8763 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms