Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Diexf-201ENSMUST00000085555 5570 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Adcy9-202ENSMUST00000117801 4507 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm19040-201ENSMUST00000203280 4726 ntBASIC9.52□□□□□ -0.89
Hmgb3O54879 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Ppip5k1-201ENSMUST00000052029 5533 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm44415-201ENSMUST00000204151 2112 ntBASIC9.52□□□□□ -0.89
Hmgb3O54879 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hmgb3O54879 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 AC131586.1-201ENSMUST00000228844 2964 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Gm7964-201ENSMUST00000051522 1378 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 Rassf2-201ENSMUST00000028814 8233 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Itpr2-202ENSMUST00000079573 11679 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Brat1-203ENSMUST00000110806 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Gm43860-201ENSMUST00000201742 2705 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Ctsl-205ENSMUST00000222517 6168 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 Gm14999-201ENSMUST00000121039 624 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Mir6977-201ENSMUST00000184960 64 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Gm9908-201ENSMUST00000211534 448 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 CT030657.3-201ENSMUST00000222707 1200 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 Ddr1-201ENSMUST00000003628 3802 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Gm10268-201ENSMUST00000085340 555 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Tet3-202ENSMUST00000089622 10904 ntTSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Bcor-201ENSMUST00000043441 6113 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Tcaf1-201ENSMUST00000045054 5257 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 AC126257.1-201ENSMUST00000213195 1536 ntBASIC9.51□□□□□ -0.89
Hmgb3O54879 Dhx34-204ENSMUST00000121123 3880 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
Hmgb3O54879 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hmgb3O54879 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC9.5□□□□□ -0.89
Hmgb3O54879 Shroom2-201ENSMUST00000062317 6997 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Atg9a-205ENSMUST00000188347 4041 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
Hmgb3O54879 Adgra1-201ENSMUST00000026548 4758 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Tanc1-208ENSMUST00000139863 7246 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Ephb2-202ENSMUST00000105845 10902 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Angptl2-201ENSMUST00000004208 3339 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Gm44207-201ENSMUST00000204568 1424 ntBASIC9.5□□□□□ -0.89
Hmgb3O54879 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Pdpk1-202ENSMUST00000102927 7161 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Mettl14-202ENSMUST00000090371 7197 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Gm15991-202ENSMUST00000212123 3565 ntBASIC9.5□□□□□ -0.89
Hmgb3O54879 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Rassf2-202ENSMUST00000103182 4589 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
Hmgb3O54879 2900026A02Rik-202ENSMUST00000211733 10238 ntAPPRIS ALT2 TSL 5 BASIC9.5□□□□□ -0.89
Hmgb3O54879 Gm15920-201ENSMUST00000118998 402 ntBASIC9.5□□□□□ -0.89
Hmgb3O54879 Gm11700-201ENSMUST00000119409 403 ntBASIC9.5□□□□□ -0.89
Hmgb3O54879 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
Hmgb3O54879 Mir1894-201ENSMUST00000122802 81 ntBASIC9.5□□□□□ -0.89
Hmgb3O54879 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC9.5□□□□□ -0.89
Hmgb3O54879 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
Hmgb3O54879 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Gm27023-201ENSMUST00000182372 285 ntBASIC9.5□□□□□ -0.89
Hmgb3O54879 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Gm18584-201ENSMUST00000203098 964 ntBASIC9.5□□□□□ -0.89
Hmgb3O54879 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hmgb3O54879 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC9.5□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 118.1 ms