Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Gm27320-201ENSMUST00000184892 109 ntBASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Ifih1-201ENSMUST00000028259 5470 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Pla2g4c-201ENSMUST00000043612 3382 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Gm43868-201ENSMUST00000205187 2114 ntBASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Gm10646-201ENSMUST00000213227 3293 ntTSL 2 BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Gm8522-201ENSMUST00000118416 1929 ntBASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Gm28693-201ENSMUST00000189622 2638 ntBASIC10.88□□□□□ -0.67
Ddx28Q9CWT6 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Eya1-209ENSMUST00000190337 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Papln-201ENSMUST00000021646 4260 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Cmya5-201ENSMUST00000062122 11850 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Gm23270-201ENSMUST00000104055 131 ntBASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Gm7584-201ENSMUST00000175829 940 ntBASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Gm43758-201ENSMUST00000199500 367 ntBASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Gm7118-201ENSMUST00000200167 1003 ntBASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Gm10312-201ENSMUST00000078515 489 ntBASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Pigc-205ENSMUST00000193784 4207 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Gm19692-201ENSMUST00000203856 2084 ntBASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Tia1-206ENSMUST00000113713 3108 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Sptb-202ENSMUST00000166101 8084 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Tank-203ENSMUST00000112495 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Scn8a-203ENSMUST00000108908 7030 ntAPPRIS ALT1 TSL 5 BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Ddx28Q9CWT6 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 8030423F21Rik-201ENSMUST00000064097 2851 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Gm3096-201ENSMUST00000185770 364 ntBASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Gm31256-201ENSMUST00000194705 506 ntBASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Ddx28Q9CWT6 Gm43172-201ENSMUST00000202139 2137 ntBASIC10.86□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 84.9 ms