Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Gm43966-201ENSMUST00000203301 612 ntBASIC13.93□□□□□ -0.18
Brf1Q8CFK2 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Gm14150-201ENSMUST00000122404 1354 ntBASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Brf1Q8CFK2 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 n-R5s64-201ENSMUST00000102019 119 ntBASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Gm22920-201ENSMUST00000102175 109 ntBASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Gm22711-201ENSMUST00000116890 133 ntBASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Gm9062-201ENSMUST00000117712 727 ntBASIC13.92□□□□□ -0.18
Brf1Q8CFK2 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Mir7686-201ENSMUST00000200604 57 ntBASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Gm7504-201ENSMUST00000201449 424 ntBASIC13.92□□□□□ -0.18
Brf1Q8CFK2 AC164437.3-201ENSMUST00000228323 347 ntBASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Brf1Q8CFK2 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 AC154537.1-201ENSMUST00000226101 1304 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gm37600-201ENSMUST00000193764 3292 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gm6335-201ENSMUST00000118081 1194 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gm7816-201ENSMUST00000119884 1194 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gm15542-201ENSMUST00000121585 1194 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Mir6979-201ENSMUST00000183927 56 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gm29164-201ENSMUST00000185454 1024 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gm44008-201ENSMUST00000204345 412 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Gm44506-201ENSMUST00000206278 965 ntBASIC13.91□□□□□ -0.18
Brf1Q8CFK2 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Brf1Q8CFK2 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms