Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Astn1-205ENSMUST00000193042 7248 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Gm14314-201ENSMUST00000118225 1015 ntBASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Gm14441-201ENSMUST00000121960 540 ntBASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Gm8100-201ENSMUST00000182906 988 ntBASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Gm10774-201ENSMUST00000188689 204 ntBASIC13.49□□□□□ -0.25
Vps53Q8CCB4 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Pdp2-201ENSMUST00000059588 5692 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Vps53Q8CCB4 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Sez6l-201ENSMUST00000075387 6055 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gm38194-201ENSMUST00000194529 2211 ntBASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Srgap3-202ENSMUST00000088373 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gm14724-201ENSMUST00000118400 537 ntBASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gm4157-201ENSMUST00000211647 679 ntBASIC13.48□□□□□ -0.25
Vps53Q8CCB4 AC153954.1-201ENSMUST00000216959 255 ntBASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 AC122408.1-201ENSMUST00000218949 218 ntBASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 CT030637.1-201ENSMUST00000228016 669 ntBASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Gm28719-201ENSMUST00000187779 1757 ntBASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps53Q8CCB4 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Ptpro-201ENSMUST00000077115 5049 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Phf21a-202ENSMUST00000068702 6023 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Vps53Q8CCB4 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms