Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.5□□□□□ -0.41
RaraP11416 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
RaraP11416 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
RaraP11416 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC12.5□□□□□ -0.41
RaraP11416 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC12.5□□□□□ -0.41
RaraP11416 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
RaraP11416 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC12.5□□□□□ -0.41
RaraP11416 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RaraP11416 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
RaraP11416 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
RaraP11416 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC12.49□□□□□ -0.41
RaraP11416 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
RaraP11416 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC12.49□□□□□ -0.41
RaraP11416 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
RaraP11416 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
RaraP11416 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
RaraP11416 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC12.49□□□□□ -0.41
RaraP11416 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
RaraP11416 Gm13996-201ENSMUST00000118456 430 ntBASIC12.49□□□□□ -0.41
RaraP11416 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC12.49□□□□□ -0.41
RaraP11416 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Gm27627-201ENSMUST00000183644 150 ntBASIC12.49□□□□□ -0.41
RaraP11416 Gm6439-201ENSMUST00000199849 862 ntBASIC12.49□□□□□ -0.41
RaraP11416 Gm43822-201ENSMUST00000200285 476 ntBASIC12.49□□□□□ -0.41
RaraP11416 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC12.49□□□□□ -0.41
RaraP11416 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC12.49□□□□□ -0.41
RaraP11416 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.49□□□□□ -0.41
RaraP11416 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.49□□□□□ -0.41
RaraP11416 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC12.49□□□□□ -0.41
RaraP11416 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
RaraP11416 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
RaraP11416 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 AC154404.1-201ENSMUST00000223601 2077 ntBASIC12.49□□□□□ -0.41
RaraP11416 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
RaraP11416 Gm10110-202ENSMUST00000228705 3220 ntBASIC12.49□□□□□ -0.41
RaraP11416 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
RaraP11416 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
RaraP11416 Gm38292-201ENSMUST00000192646 3045 ntBASIC12.48□□□□□ -0.41
RaraP11416 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC12.48□□□□□ -0.41
RaraP11416 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
RaraP11416 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
RaraP11416 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
RaraP11416 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
RaraP11416 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
RaraP11416 Gm13665-201ENSMUST00000120830 528 ntBASIC12.48□□□□□ -0.41
RaraP11416 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC12.48□□□□□ -0.41
RaraP11416 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Gm26361-201ENSMUST00000158868 186 ntBASIC12.48□□□□□ -0.41
RaraP11416 Gm20495-201ENSMUST00000173902 235 ntBASIC12.48□□□□□ -0.41
RaraP11416 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RaraP11416 Gm29615-201ENSMUST00000185371 697 ntBASIC12.48□□□□□ -0.41
RaraP11416 Gm28224-201ENSMUST00000186078 697 ntBASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms