Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Hmbox1-205ENSMUST00000176128 2958 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.63
Lire1P11260 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Serpinb6b-203ENSMUST00000164541 1719 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Actr2-201ENSMUST00000000137 3631 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Tmem126b-201ENSMUST00000032843 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Fndc9-201ENSMUST00000060185 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lire1P11260 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Lire1P11260 Gm45597-201ENSMUST00000211524 1994 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Pcdh15-221ENSMUST00000146682 1891 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 AC126444.1-201ENSMUST00000225938 1768 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Tldc1-201ENSMUST00000049156 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Gm13920-201ENSMUST00000146134 1663 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Gm43908-201ENSMUST00000205074 1472 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Trpc6-202ENSMUST00000214596 2913 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC11.08□□□□□ -0.64
Lire1P11260 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC11.08□□□□□ -0.64
Lire1P11260 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC11.08□□□□□ -0.64
Lire1P11260 Gm25043-201ENSMUST00000158604 212 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC11.08□□□□□ -0.64
Lire1P11260 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Lire1P11260 Gm24514-201ENSMUST00000174961 285 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Gm27023-201ENSMUST00000182372 285 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Gm8856-201ENSMUST00000185254 1144 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.08□□□□□ -0.64
Lire1P11260 Gm8959-201ENSMUST00000213150 571 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Gm8712-201ENSMUST00000221090 701 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Gm8385-201ENSMUST00000058999 643 ntBASIC11.08□□□□□ -0.64
Lire1P11260 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC11.08□□□□□ -0.64
Lire1P11260 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lire1P11260 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Lire1P11260 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Ndufb2-205ENSMUST00000135671 4371 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Mitf-201ENSMUST00000043628 1921 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Lire1P11260 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Lire1P11260 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Atxn1-201ENSMUST00000091628 10569 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
Lire1P11260 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
Lire1P11260 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
Lire1P11260 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC11.07□□□□□ -0.64
Lire1P11260 Gm13736-201ENSMUST00000119272 253 ntBASIC11.07□□□□□ -0.64
Lire1P11260 Gm13875-201ENSMUST00000120162 282 ntBASIC11.07□□□□□ -0.64
Lire1P11260 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC11.07□□□□□ -0.64
Lire1P11260 Gm25732-201ENSMUST00000175168 60 ntBASIC11.07□□□□□ -0.64
Lire1P11260 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Gm37201-201ENSMUST00000191845 523 ntBASIC11.07□□□□□ -0.64
Lire1P11260 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC11.07□□□□□ -0.64
Lire1P11260 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 AC154222.2-201ENSMUST00000225848 607 ntBASIC11.07□□□□□ -0.64
Lire1P11260 AC167013.1-201ENSMUST00000228592 202 ntBASIC11.07□□□□□ -0.64
Lire1P11260 2210010C04Rik-201ENSMUST00000031931 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Lire1P11260 Gm10312-201ENSMUST00000078515 489 ntBASIC11.07□□□□□ -0.64
Lire1P11260 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lire1P11260 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lire1P11260 Gm45889-202ENSMUST00000211255 2358 ntTSL 5 BASIC11.07□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms