Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vti1aO89116 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vti1aO89116 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vti1aO89116 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vti1aO89116 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Vti1aO89116 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vti1aO89116 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Vti1aO89116 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vti1aO89116 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Vti1aO89116 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.52□□□□□ -0.41
Vti1aO89116 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC12.52□□□□□ -0.41
Vti1aO89116 Gm11836-201ENSMUST00000121022 441 ntBASIC12.52□□□□□ -0.41
Vti1aO89116 Gm22138-201ENSMUST00000158748 128 ntBASIC12.52□□□□□ -0.41
Vti1aO89116 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Vti1aO89116 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Gm43852-201ENSMUST00000202098 917 ntBASIC12.52□□□□□ -0.41
Vti1aO89116 Gm44270-201ENSMUST00000203084 1234 ntBASIC12.52□□□□□ -0.41
Vti1aO89116 Gm44980-201ENSMUST00000205826 314 ntBASIC12.52□□□□□ -0.41
Vti1aO89116 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC12.52□□□□□ -0.41
Vti1aO89116 AC129219.2-201ENSMUST00000224324 701 ntBASIC12.52□□□□□ -0.41
Vti1aO89116 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Vti1aO89116 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC12.52□□□□□ -0.41
Vti1aO89116 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.41
Vti1aO89116 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Vti1aO89116 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Vti1aO89116 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vti1aO89116 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Prr5l-210ENSMUST00000171088 4296 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Vti1aO89116 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Vti1aO89116 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Vti1aO89116 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Slc6a20b-201ENSMUST00000026273 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC12.51□□□□□ -0.41
Vti1aO89116 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC12.51□□□□□ -0.41
Vti1aO89116 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC12.51□□□□□ -0.41
Vti1aO89116 Rn7s6-201ENSMUST00000175005 291 ntBASIC12.51□□□□□ -0.41
Vti1aO89116 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Vti1aO89116 Mir6998-201ENSMUST00000183343 64 ntBASIC12.51□□□□□ -0.41
Vti1aO89116 Gm42518-201ENSMUST00000196277 938 ntBASIC12.51□□□□□ -0.41
Vti1aO89116 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.51□□□□□ -0.41
Vti1aO89116 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC12.51□□□□□ -0.41
Vti1aO89116 CT485606.1-201ENSMUST00000213187 878 ntBASIC12.51□□□□□ -0.41
Vti1aO89116 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC12.51□□□□□ -0.41
Vti1aO89116 Gm9661-201ENSMUST00000221611 1122 ntBASIC12.51□□□□□ -0.41
Vti1aO89116 AC166344.1-201ENSMUST00000223745 674 ntBASIC12.51□□□□□ -0.41
Vti1aO89116 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Vti1aO89116 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Vti1aO89116 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Vti1aO89116 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Gm18198-201ENSMUST00000204986 1551 ntBASIC12.51□□□□□ -0.41
Vti1aO89116 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.51□□□□□ -0.41
Vti1aO89116 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vti1aO89116 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vti1aO89116 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vti1aO89116 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vti1aO89116 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vti1aO89116 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vti1aO89116 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vti1aO89116 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vti1aO89116 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vti1aO89116 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Vti1aO89116 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC12.5□□□□□ -0.41
Vti1aO89116 Gm16071-201ENSMUST00000119589 793 ntBASIC12.5□□□□□ -0.41
Vti1aO89116 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vti1aO89116 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC12.5□□□□□ -0.41
Vti1aO89116 Gm11675-201ENSMUST00000121873 832 ntBASIC12.5□□□□□ -0.41
Vti1aO89116 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
Vti1aO89116 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms