Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC22.41■■□□□ 1.18
Prpf40aQ9R1C7 Gm44949-201ENSMUST00000206423 1450 ntBASIC22.41■■□□□ 1.18
Prpf40aQ9R1C7 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Prpf40aQ9R1C7 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Prpf40aQ9R1C7 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC22.4■■□□□ 1.18
Prpf40aQ9R1C7 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Prpf40aQ9R1C7 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC22.4■■□□□ 1.18
Prpf40aQ9R1C7 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Prpf40aQ9R1C7 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
Prpf40aQ9R1C7 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Prpf40aQ9R1C7 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Prpf40aQ9R1C7 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
Prpf40aQ9R1C7 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Prpf40aQ9R1C7 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Prpf40aQ9R1C7 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Prpf40aQ9R1C7 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Prpf40aQ9R1C7 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Prpf40aQ9R1C7 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Prpf40aQ9R1C7 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Prpf40aQ9R1C7 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Prpf40aQ9R1C7 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
Prpf40aQ9R1C7 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Prpf40aQ9R1C7 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Prpf40aQ9R1C7 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Prpf40aQ9R1C7 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Prpf40aQ9R1C7 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Prpf40aQ9R1C7 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Prpf40aQ9R1C7 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Prpf40aQ9R1C7 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC22.36■■□□□ 1.17
Prpf40aQ9R1C7 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC22.36■■□□□ 1.17
Prpf40aQ9R1C7 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Prpf40aQ9R1C7 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Gm14117-201ENSMUST00000122417 843 ntBASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Prpf40aQ9R1C7 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Prpf40aQ9R1C7 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Prpf40aQ9R1C7 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Prpf40aQ9R1C7 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Prpf40aQ9R1C7 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Prpf40aQ9R1C7 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC22.34■■□□□ 1.17
Prpf40aQ9R1C7 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC22.33■■□□□ 1.17
Prpf40aQ9R1C7 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Prpf40aQ9R1C7 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Prpf40aQ9R1C7 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC22.33■■□□□ 1.16
Prpf40aQ9R1C7 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC22.33■■□□□ 1.16
Prpf40aQ9R1C7 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Prpf40aQ9R1C7 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Gm5913-201ENSMUST00000119397 1399 ntBASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Prpf40aQ9R1C7 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Prpf40aQ9R1C7 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Prpf40aQ9R1C7 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Prpf40aQ9R1C7 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Prpf40aQ9R1C7 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Prpf40aQ9R1C7 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Prpf40aQ9R1C7 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Prpf40aQ9R1C7 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC22.31■■□□□ 1.16
Prpf40aQ9R1C7 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Prpf40aQ9R1C7 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms