Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm26766-202ENSMUST00000227544 2347 ntBASIC24.73■■□□□ 1.55
Scn11aQ9R053 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
Scn11aQ9R053 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Scn11aQ9R053 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
Scn11aQ9R053 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Scn11aQ9R053 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Scn11aQ9R053 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Scn11aQ9R053 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Scn11aQ9R053 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC24.72■■□□□ 1.55
Scn11aQ9R053 Mir7075-201ENSMUST00000184187 82 ntBASIC24.72■■□□□ 1.55
Scn11aQ9R053 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC24.72■■□□□ 1.55
Scn11aQ9R053 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Scn11aQ9R053 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Scn11aQ9R053 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Scn11aQ9R053 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Scn11aQ9R053 Gm21168-201ENSMUST00000199646 1096 ntBASIC24.71■■□□□ 1.55
Scn11aQ9R053 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Scn11aQ9R053 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Scn11aQ9R053 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC24.7■■□□□ 1.55
Scn11aQ9R053 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC24.7■■□□□ 1.55
Scn11aQ9R053 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Scn11aQ9R053 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC24.7■■□□□ 1.54
Scn11aQ9R053 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Scn11aQ9R053 Gm5874-201ENSMUST00000096101 508 ntBASIC24.7■■□□□ 1.54
Scn11aQ9R053 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Scn11aQ9R053 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
Scn11aQ9R053 AC166356.1-201ENSMUST00000228236 1426 ntBASIC24.69■■□□□ 1.54
Scn11aQ9R053 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Scn11aQ9R053 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC24.69■■□□□ 1.54
Scn11aQ9R053 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC24.69■■□□□ 1.54
Scn11aQ9R053 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Scn11aQ9R053 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Scn11aQ9R053 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Scn11aQ9R053 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Scn11aQ9R053 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Scn11aQ9R053 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn11aQ9R053 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn11aQ9R053 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC24.66■■□□□ 1.54
Scn11aQ9R053 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scn11aQ9R053 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC24.65■■□□□ 1.54
Scn11aQ9R053 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Wdr70-203ENSMUST00000227371 1130 ntBASIC24.65■■□□□ 1.54
Scn11aQ9R053 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn11aQ9R053 Gm7160-202ENSMUST00000188519 1027 ntBASIC24.64■■□□□ 1.53
Scn11aQ9R053 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Scn11aQ9R053 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Scn11aQ9R053 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Scn11aQ9R053 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Scn11aQ9R053 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Scn11aQ9R053 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
Scn11aQ9R053 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Scn11aQ9R053 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
Scn11aQ9R053 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Scn11aQ9R053 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Scn11aQ9R053 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Scn11aQ9R053 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Scn11aQ9R053 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC24.62■■□□□ 1.53
Scn11aQ9R053 CT025689.6-201ENSMUST00000224991 1104 ntBASIC24.62■■□□□ 1.53
Scn11aQ9R053 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Scn11aQ9R053 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
Scn11aQ9R053 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Scn11aQ9R053 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Scn11aQ9R053 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Scn11aQ9R053 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
Scn11aQ9R053 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC24.6■■□□□ 1.53
Scn11aQ9R053 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
Scn11aQ9R053 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
Scn11aQ9R053 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Scn11aQ9R053 Gm44949-201ENSMUST00000206423 1450 ntBASIC24.6■■□□□ 1.53
Scn11aQ9R053 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Scn11aQ9R053 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC24.59■■□□□ 1.53
Scn11aQ9R053 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms