Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Lima1Q9ERG0 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lima1Q9ERG0 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lima1Q9ERG0 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lima1Q9ERG0 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.12■□□□□ 0.81
Lima1Q9ERG0 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Lima1Q9ERG0 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Lima1Q9ERG0 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Lima1Q9ERG0 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Lima1Q9ERG0 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.11■□□□□ 0.81
Lima1Q9ERG0 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Lima1Q9ERG0 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Lima1Q9ERG0 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Lima1Q9ERG0 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Lima1Q9ERG0 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Lima1Q9ERG0 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Lima1Q9ERG0 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Lima1Q9ERG0 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Lima1Q9ERG0 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.09■□□□□ 0.81
Lima1Q9ERG0 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Lima1Q9ERG0 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.81
Lima1Q9ERG0 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Lima1Q9ERG0 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Lima1Q9ERG0 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Lima1Q9ERG0 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Lima1Q9ERG0 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.08■□□□□ 0.81
Lima1Q9ERG0 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Lima1Q9ERG0 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.08■□□□□ 0.81
Lima1Q9ERG0 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.08■□□□□ 0.81
Lima1Q9ERG0 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Lima1Q9ERG0 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Lima1Q9ERG0 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.08■□□□□ 0.8
Lima1Q9ERG0 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Lima1Q9ERG0 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Lima1Q9ERG0 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Lima1Q9ERG0 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.06■□□□□ 0.8
Lima1Q9ERG0 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Lima1Q9ERG0 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Lima1Q9ERG0 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Lima1Q9ERG0 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Lima1Q9ERG0 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Lima1Q9ERG0 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Lima1Q9ERG0 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.05■□□□□ 0.8
Lima1Q9ERG0 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.05■□□□□ 0.8
Lima1Q9ERG0 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC20.05■□□□□ 0.8
Lima1Q9ERG0 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
Lima1Q9ERG0 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Lima1Q9ERG0 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Lima1Q9ERG0 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.04■□□□□ 0.8
Lima1Q9ERG0 AC158990.1-201ENSMUST00000221450 2016 ntBASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Lima1Q9ERG0 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms