Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdk9Q99J95 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.47■□□□□ 0.87
Cdk9Q99J95 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdk9Q99J95 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.47■□□□□ 0.87
Cdk9Q99J95 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.47■□□□□ 0.87
Cdk9Q99J95 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.47■□□□□ 0.87
Cdk9Q99J95 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdk9Q99J95 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdk9Q99J95 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdk9Q99J95 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk9Q99J95 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.46■□□□□ 0.87
Cdk9Q99J95 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.46■□□□□ 0.87
Cdk9Q99J95 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Cdk9Q99J95 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk9Q99J95 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk9Q99J95 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk9Q99J95 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.46■□□□□ 0.87
Cdk9Q99J95 Gm12366-201ENSMUST00000121722 873 ntBASIC20.46■□□□□ 0.87
Cdk9Q99J95 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.46■□□□□ 0.87
Cdk9Q99J95 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.46■□□□□ 0.87
Cdk9Q99J95 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.46■□□□□ 0.87
Cdk9Q99J95 Gm5786-201ENSMUST00000085368 882 ntBASIC20.46■□□□□ 0.87
Cdk9Q99J95 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdk9Q99J95 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cdk9Q99J95 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdk9Q99J95 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.45■□□□□ 0.86
Cdk9Q99J95 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cdk9Q99J95 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.45■□□□□ 0.86
Cdk9Q99J95 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Cdk9Q99J95 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.45■□□□□ 0.86
Cdk9Q99J95 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cdk9Q99J95 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk9Q99J95 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk9Q99J95 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk9Q99J95 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk9Q99J95 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk9Q99J95 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk9Q99J95 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdk9Q99J95 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdk9Q99J95 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdk9Q99J95 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Cdk9Q99J95 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdk9Q99J95 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Cdk9Q99J95 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdk9Q99J95 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Cdk9Q99J95 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdk9Q99J95 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdk9Q99J95 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Gm27502-201ENSMUST00000183495 199 ntBASIC20.42■□□□□ 0.86
Cdk9Q99J95 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.42■□□□□ 0.86
Cdk9Q99J95 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdk9Q99J95 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdk9Q99J95 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
Cdk9Q99J95 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdk9Q99J95 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdk9Q99J95 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.4■□□□□ 0.86
Cdk9Q99J95 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdk9Q99J95 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdk9Q99J95 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdk9Q99J95 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdk9Q99J95 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Cdk9Q99J95 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.39■□□□□ 0.86
Cdk9Q99J95 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Cdk9Q99J95 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Cdk9Q99J95 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Cdk9Q99J95 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.39■□□□□ 0.86
Cdk9Q99J95 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Cdk9Q99J95 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdk9Q99J95 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdk9Q99J95 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Cdk9Q99J95 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Cdk9Q99J95 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdk9Q99J95 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdk9Q99J95 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdk9Q99J95 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms