Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha1Q91Y21 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha1Q91Y21 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha1Q91Y21 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Pcdha1Q91Y21 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha1Q91Y21 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha1Q91Y21 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha1Q91Y21 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.35■■□□□ 1.01
Pcdha1Q91Y21 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha1Q91Y21 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha1Q91Y21 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC21.34■■□□□ 1.01
Pcdha1Q91Y21 Gm7143-201ENSMUST00000222811 859 ntBASIC21.34■■□□□ 1.01
Pcdha1Q91Y21 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.34■■□□□ 1.01
Pcdha1Q91Y21 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Pcdha1Q91Y21 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.34■■□□□ 1.01
Pcdha1Q91Y21 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha1Q91Y21 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha1Q91Y21 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha1Q91Y21 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha1Q91Y21 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.33■■□□□ 1.01
Pcdha1Q91Y21 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha1Q91Y21 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Pcdha1Q91Y21 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Pcdha1Q91Y21 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Pcdha1Q91Y21 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdha1Q91Y21 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdha1Q91Y21 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdha1Q91Y21 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.32■■□□□ 1
Pcdha1Q91Y21 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC21.32■■□□□ 1
Pcdha1Q91Y21 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdha1Q91Y21 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Pcdha1Q91Y21 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Pcdha1Q91Y21 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Pcdha1Q91Y21 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.31■■□□□ 1
Pcdha1Q91Y21 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.31■■□□□ 1
Pcdha1Q91Y21 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdha1Q91Y21 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.31■■□□□ 1
Pcdha1Q91Y21 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pcdha1Q91Y21 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.3■■□□□ 1
Pcdha1Q91Y21 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.29■■□□□ 1
Pcdha1Q91Y21 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Pcdha1Q91Y21 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Pcdha1Q91Y21 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.29■■□□□ 1
Pcdha1Q91Y21 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.29■■□□□ 1
Pcdha1Q91Y21 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Pcdha1Q91Y21 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Pcdha1Q91Y21 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Pcdha1Q91Y21 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
Pcdha1Q91Y21 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha1Q91Y21 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.28■■□□□ 1
Pcdha1Q91Y21 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha1Q91Y21 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha1Q91Y21 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha1Q91Y21 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha1Q91Y21 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Pcdha1Q91Y21 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdha1Q91Y21 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdha1Q91Y21 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Pcdha1Q91Y21 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
Pcdha1Q91Y21 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdha1Q91Y21 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdha1Q91Y21 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdha1Q91Y21 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdha1Q91Y21 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC21.26■□□□□ 0.99
Pcdha1Q91Y21 Serp2-204ENSMUST00000228055 705 ntBASIC21.26■□□□□ 0.99
Pcdha1Q91Y21 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdha1Q91Y21 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha1Q91Y21 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.25■□□□□ 0.99
Pcdha1Q91Y21 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha1Q91Y21 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha1Q91Y21 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha1Q91Y21 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha1Q91Y21 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha1Q91Y21 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdha1Q91Y21 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Pcdha1Q91Y21 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.24■□□□□ 0.99
Pcdha1Q91Y21 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha1Q91Y21 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha1Q91Y21 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha1Q91Y21 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha1Q91Y21 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha1Q91Y21 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Pcdha1Q91Y21 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdha1Q91Y21 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.23■□□□□ 0.99
Pcdha1Q91Y21 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.23■□□□□ 0.99
Pcdha1Q91Y21 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha1Q91Y21 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha1Q91Y21 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha1Q91Y21 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha1Q91Y21 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha1Q91Y21 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha1Q91Y21 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha1Q91Y21 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
Pcdha1Q91Y21 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha1Q91Y21 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms