Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 AC122428.2-201ENSMUST00000216321 1832 ntBASIC24.26■■□□□ 1.47
Trim56Q80VI1 Gm43034-201ENSMUST00000198678 1364 ntBASIC24.25■■□□□ 1.47
Trim56Q80VI1 Gm6277-202ENSMUST00000224036 2779 ntBASIC24.25■■□□□ 1.47
Trim56Q80VI1 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Trim56Q80VI1 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Trim56Q80VI1 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
Trim56Q80VI1 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC24.24■■□□□ 1.47
Trim56Q80VI1 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim56Q80VI1 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim56Q80VI1 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim56Q80VI1 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Trim56Q80VI1 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC24.24■■□□□ 1.47
Trim56Q80VI1 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim56Q80VI1 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim56Q80VI1 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC24.24■■□□□ 1.47
Trim56Q80VI1 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Trim56Q80VI1 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim56Q80VI1 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trim56Q80VI1 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trim56Q80VI1 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trim56Q80VI1 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trim56Q80VI1 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
Trim56Q80VI1 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
Trim56Q80VI1 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC24.23■■□□□ 1.47
Trim56Q80VI1 AC140930.3-201ENSMUST00000222935 274 ntBASIC24.23■■□□□ 1.47
Trim56Q80VI1 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trim56Q80VI1 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trim56Q80VI1 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC24.23■■□□□ 1.47
Trim56Q80VI1 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Trim56Q80VI1 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Trim56Q80VI1 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC24.22■■□□□ 1.47
Trim56Q80VI1 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Trim56Q80VI1 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC24.22■■□□□ 1.47
Trim56Q80VI1 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Trim56Q80VI1 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Trim56Q80VI1 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim56Q80VI1 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim56Q80VI1 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim56Q80VI1 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim56Q80VI1 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC24.21■■□□□ 1.47
Trim56Q80VI1 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim56Q80VI1 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Trim56Q80VI1 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim56Q80VI1 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim56Q80VI1 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim56Q80VI1 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC24.2■■□□□ 1.46
Trim56Q80VI1 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim56Q80VI1 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim56Q80VI1 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Trim56Q80VI1 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim56Q80VI1 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Trim56Q80VI1 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trim56Q80VI1 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trim56Q80VI1 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trim56Q80VI1 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trim56Q80VI1 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Trim56Q80VI1 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trim56Q80VI1 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trim56Q80VI1 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim56Q80VI1 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim56Q80VI1 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
Trim56Q80VI1 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim56Q80VI1 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Trim56Q80VI1 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Trim56Q80VI1 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
Trim56Q80VI1 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Trim56Q80VI1 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Trim56Q80VI1 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim56Q80VI1 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim56Q80VI1 Gm43530-201ENSMUST00000195920 274 ntBASIC24.17■■□□□ 1.46
Trim56Q80VI1 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim56Q80VI1 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim56Q80VI1 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim56Q80VI1 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim56Q80VI1 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC24.16■■□□□ 1.46
Trim56Q80VI1 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim56Q80VI1 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim56Q80VI1 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim56Q80VI1 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim56Q80VI1 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim56Q80VI1 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim56Q80VI1 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Trim56Q80VI1 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC24.15■■□□□ 1.46
Trim56Q80VI1 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Trim56Q80VI1 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim56Q80VI1 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Trim56Q80VI1 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC24.14■■□□□ 1.45
Trim56Q80VI1 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC24.14■■□□□ 1.45
Trim56Q80VI1 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC24.14■■□□□ 1.45
Trim56Q80VI1 Gm9207-201ENSMUST00000198773 1115 ntBASIC24.14■■□□□ 1.45
Trim56Q80VI1 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trim56Q80VI1 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
Trim56Q80VI1 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
Trim56Q80VI1 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim56Q80VI1 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim56Q80VI1 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
Trim56Q80VI1 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim56Q80VI1 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC24.13■■□□□ 1.45
Trim56Q80VI1 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Trim56Q80VI1 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms