Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Usf1Q61069 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usf1Q61069 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usf1Q61069 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usf1Q61069 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usf1Q61069 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usf1Q61069 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usf1Q61069 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usf1Q61069 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
Usf1Q61069 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usf1Q61069 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC18.72■□□□□ 0.59
Usf1Q61069 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
Usf1Q61069 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usf1Q61069 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Usf1Q61069 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usf1Q61069 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usf1Q61069 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usf1Q61069 AV356131-201ENSMUST00000206201 750 ntBASIC18.71■□□□□ 0.59
Usf1Q61069 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usf1Q61069 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usf1Q61069 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Usf1Q61069 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC18.71■□□□□ 0.58
Usf1Q61069 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usf1Q61069 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usf1Q61069 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usf1Q61069 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC18.69■□□□□ 0.58
Usf1Q61069 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usf1Q61069 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usf1Q61069 Gm10033-202ENSMUST00000211874 928 ntBASIC18.69■□□□□ 0.58
Usf1Q61069 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usf1Q61069 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Usf1Q61069 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usf1Q61069 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usf1Q61069 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usf1Q61069 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usf1Q61069 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Usf1Q61069 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.68■□□□□ 0.58
Usf1Q61069 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usf1Q61069 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usf1Q61069 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usf1Q61069 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.68■□□□□ 0.58
Usf1Q61069 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usf1Q61069 Gm42778-201ENSMUST00000199644 553 ntBASIC18.68■□□□□ 0.58
Usf1Q61069 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usf1Q61069 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usf1Q61069 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usf1Q61069 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usf1Q61069 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usf1Q61069 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC18.67■□□□□ 0.58
Usf1Q61069 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usf1Q61069 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usf1Q61069 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.67■□□□□ 0.58
Usf1Q61069 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usf1Q61069 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.67■□□□□ 0.58
Usf1Q61069 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usf1Q61069 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usf1Q61069 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Usf1Q61069 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usf1Q61069 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usf1Q61069 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usf1Q61069 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.65■□□□□ 0.58
Usf1Q61069 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.65■□□□□ 0.58
Usf1Q61069 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usf1Q61069 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Usf1Q61069 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usf1Q61069 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usf1Q61069 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usf1Q61069 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usf1Q61069 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.64■□□□□ 0.57
Usf1Q61069 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Usf1Q61069 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usf1Q61069 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usf1Q61069 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usf1Q61069 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC18.64■□□□□ 0.57
Usf1Q61069 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usf1Q61069 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usf1Q61069 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Usf1Q61069 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usf1Q61069 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usf1Q61069 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usf1Q61069 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usf1Q61069 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Usf1Q61069 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Usf1Q61069 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usf1Q61069 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usf1Q61069 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usf1Q61069 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usf1Q61069 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Usf1Q61069 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usf1Q61069 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usf1Q61069 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC18.62■□□□□ 0.57
Usf1Q61069 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usf1Q61069 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usf1Q61069 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usf1Q61069 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usf1Q61069 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usf1Q61069 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.62■□□□□ 0.57
Usf1Q61069 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usf1Q61069 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC18.62■□□□□ 0.57
Usf1Q61069 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 284.4 ms