Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf3aQ3ULJ3 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf3aQ3ULJ3 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.67■■□□□ 1.06
Upf3aQ3ULJ3 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf3aQ3ULJ3 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf3aQ3ULJ3 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Upf3aQ3ULJ3 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf3aQ3ULJ3 Gm43060-201ENSMUST00000200621 289 ntBASIC21.66■■□□□ 1.06
Upf3aQ3ULJ3 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.66■■□□□ 1.06
Upf3aQ3ULJ3 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3aQ3ULJ3 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.65■■□□□ 1.06
Upf3aQ3ULJ3 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3aQ3ULJ3 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3aQ3ULJ3 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3aQ3ULJ3 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3aQ3ULJ3 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3aQ3ULJ3 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Upf3aQ3ULJ3 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Upf3aQ3ULJ3 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Upf3aQ3ULJ3 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Upf3aQ3ULJ3 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.64■■□□□ 1.05
Upf3aQ3ULJ3 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Upf3aQ3ULJ3 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
Upf3aQ3ULJ3 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Upf3aQ3ULJ3 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Upf3aQ3ULJ3 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Upf3aQ3ULJ3 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Gm10493-201ENSMUST00000097270 612 ntBASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Upf3aQ3ULJ3 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Upf3aQ3ULJ3 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3aQ3ULJ3 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3aQ3ULJ3 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3aQ3ULJ3 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3aQ3ULJ3 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Upf3aQ3ULJ3 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Upf3aQ3ULJ3 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.6■■□□□ 1.05
Upf3aQ3ULJ3 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3aQ3ULJ3 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Upf3aQ3ULJ3 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.6■■□□□ 1.05
Upf3aQ3ULJ3 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3aQ3ULJ3 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Upf3aQ3ULJ3 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Upf3aQ3ULJ3 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Upf3aQ3ULJ3 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Upf3aQ3ULJ3 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.58■■□□□ 1.05
Upf3aQ3ULJ3 Gm29257-201ENSMUST00000186115 639 ntBASIC21.58■■□□□ 1.05
Upf3aQ3ULJ3 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Upf3aQ3ULJ3 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Upf3aQ3ULJ3 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Upf3aQ3ULJ3 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
Upf3aQ3ULJ3 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Upf3aQ3ULJ3 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3aQ3ULJ3 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.57■■□□□ 1.04
Upf3aQ3ULJ3 Smad6-203ENSMUST00000179458 273 ntBASIC21.57■■□□□ 1.04
Upf3aQ3ULJ3 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3aQ3ULJ3 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3aQ3ULJ3 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3aQ3ULJ3 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3aQ3ULJ3 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3aQ3ULJ3 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Upf3aQ3ULJ3 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3aQ3ULJ3 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Upf3aQ3ULJ3 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3aQ3ULJ3 Gm7291-201ENSMUST00000199147 382 ntBASIC21.56■■□□□ 1.04
Upf3aQ3ULJ3 Gm40848-201ENSMUST00000221998 324 ntBASIC21.56■■□□□ 1.04
Upf3aQ3ULJ3 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.56■■□□□ 1.04
Upf3aQ3ULJ3 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3aQ3ULJ3 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3aQ3ULJ3 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Upf3aQ3ULJ3 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms