Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm43759-201ENSMUST00000196925 1261 ntBASIC17.43■□□□□ 0.38
Col8a1Q00780 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col8a1Q00780 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Col8a1Q00780 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col8a1Q00780 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col8a1Q00780 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Col8a1Q00780 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
Col8a1Q00780 Gm17641-201ENSMUST00000166328 2350 ntBASIC17.43■□□□□ 0.38
Col8a1Q00780 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col8a1Q00780 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col8a1Q00780 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col8a1Q00780 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col8a1Q00780 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC17.42■□□□□ 0.38
Col8a1Q00780 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.42■□□□□ 0.38
Col8a1Q00780 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Col8a1Q00780 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col8a1Q00780 AV356131-201ENSMUST00000206201 750 ntBASIC17.42■□□□□ 0.38
Col8a1Q00780 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col8a1Q00780 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col8a1Q00780 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col8a1Q00780 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Col8a1Q00780 Gm4430-201ENSMUST00000192413 1943 ntBASIC17.41■□□□□ 0.38
Col8a1Q00780 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col8a1Q00780 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC17.41■□□□□ 0.38
Col8a1Q00780 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col8a1Q00780 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Col8a1Q00780 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col8a1Q00780 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
Col8a1Q00780 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Col8a1Q00780 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.41■□□□□ 0.38
Col8a1Q00780 Spcs1-204ENSMUST00000226782 949 ntBASIC17.41■□□□□ 0.38
Col8a1Q00780 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col8a1Q00780 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col8a1Q00780 Gm10602-201ENSMUST00000098239 609 ntBASIC17.41■□□□□ 0.38
Col8a1Q00780 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Col8a1Q00780 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col8a1Q00780 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col8a1Q00780 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col8a1Q00780 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col8a1Q00780 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.4■□□□□ 0.38
Col8a1Q00780 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col8a1Q00780 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col8a1Q00780 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col8a1Q00780 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col8a1Q00780 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col8a1Q00780 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC17.39■□□□□ 0.37
Col8a1Q00780 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.39■□□□□ 0.37
Col8a1Q00780 Gm10033-202ENSMUST00000211874 928 ntBASIC17.39■□□□□ 0.37
Col8a1Q00780 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col8a1Q00780 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col8a1Q00780 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col8a1Q00780 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col8a1Q00780 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col8a1Q00780 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col8a1Q00780 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC17.38■□□□□ 0.37
Col8a1Q00780 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC17.38■□□□□ 0.37
Col8a1Q00780 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col8a1Q00780 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.38■□□□□ 0.37
Col8a1Q00780 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col8a1Q00780 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.37■□□□□ 0.37
Col8a1Q00780 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.37■□□□□ 0.37
Col8a1Q00780 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col8a1Q00780 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC17.37■□□□□ 0.37
Col8a1Q00780 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col8a1Q00780 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC17.37■□□□□ 0.37
Col8a1Q00780 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC17.37■□□□□ 0.37
Col8a1Q00780 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col8a1Q00780 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Col8a1Q00780 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC17.36■□□□□ 0.37
Col8a1Q00780 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Col8a1Q00780 Gm6934-201ENSMUST00000194780 1905 ntBASIC17.36■□□□□ 0.37
Col8a1Q00780 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col8a1Q00780 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col8a1Q00780 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col8a1Q00780 Kdm3b-204ENSMUST00000224715 2032 ntBASIC17.35■□□□□ 0.37
Col8a1Q00780 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col8a1Q00780 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col8a1Q00780 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC17.35■□□□□ 0.37
Col8a1Q00780 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col8a1Q00780 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Col8a1Q00780 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col8a1Q00780 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col8a1Q00780 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col8a1Q00780 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Col8a1Q00780 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col8a1Q00780 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Col8a1Q00780 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.34■□□□□ 0.37
Col8a1Q00780 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col8a1Q00780 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Col8a1Q00780 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC17.34■□□□□ 0.37
Col8a1Q00780 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms