Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC18.73■□□□□ 0.59
Cd40lgP27548 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Cd40lgP27548 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cd40lgP27548 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cd40lgP27548 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cd40lgP27548 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Cd40lgP27548 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cd40lgP27548 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Cd40lgP27548 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cd40lgP27548 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cd40lgP27548 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cd40lgP27548 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cd40lgP27548 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cd40lgP27548 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Cd40lgP27548 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Cd40lgP27548 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cd40lgP27548 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cd40lgP27548 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cd40lgP27548 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cd40lgP27548 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Cd40lgP27548 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Cd40lgP27548 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cd40lgP27548 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.7■□□□□ 0.58
Cd40lgP27548 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cd40lgP27548 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.7■□□□□ 0.58
Cd40lgP27548 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Cd40lgP27548 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cd40lgP27548 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cd40lgP27548 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
Cd40lgP27548 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cd40lgP27548 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cd40lgP27548 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Cd40lgP27548 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cd40lgP27548 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cd40lgP27548 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cd40lgP27548 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
Cd40lgP27548 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cd40lgP27548 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cd40lgP27548 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cd40lgP27548 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cd40lgP27548 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cd40lgP27548 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cd40lgP27548 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cd40lgP27548 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Cd40lgP27548 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.68■□□□□ 0.58
Cd40lgP27548 Gm22238-201ENSMUST00000175222 88 ntBASIC18.68■□□□□ 0.58
Cd40lgP27548 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cd40lgP27548 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC18.68■□□□□ 0.58
Cd40lgP27548 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cd40lgP27548 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Cd40lgP27548 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cd40lgP27548 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC18.67■□□□□ 0.58
Cd40lgP27548 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Cd40lgP27548 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cd40lgP27548 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cd40lgP27548 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC18.67■□□□□ 0.58
Cd40lgP27548 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cd40lgP27548 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Cd40lgP27548 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cd40lgP27548 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cd40lgP27548 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC18.66■□□□□ 0.58
Cd40lgP27548 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cd40lgP27548 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cd40lgP27548 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Cd40lgP27548 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cd40lgP27548 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cd40lgP27548 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cd40lgP27548 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC18.65■□□□□ 0.58
Cd40lgP27548 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cd40lgP27548 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cd40lgP27548 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC18.65■□□□□ 0.58
Cd40lgP27548 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cd40lgP27548 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cd40lgP27548 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cd40lgP27548 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cd40lgP27548 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cd40lgP27548 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cd40lgP27548 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Cd40lgP27548 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cd40lgP27548 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cd40lgP27548 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cd40lgP27548 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cd40lgP27548 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Cd40lgP27548 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cd40lgP27548 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.64■□□□□ 0.57
Cd40lgP27548 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cd40lgP27548 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Cd40lgP27548 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cd40lgP27548 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Cd40lgP27548 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.63■□□□□ 0.57
Cd40lgP27548 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cd40lgP27548 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
Cd40lgP27548 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
Cd40lgP27548 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cd40lgP27548 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cd40lgP27548 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.62■□□□□ 0.57
Cd40lgP27548 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cd40lgP27548 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cd40lgP27548 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cd40lgP27548 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms