Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Pcdha4O88689 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Pcdha4O88689 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Pcdha4O88689 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Pcdha4O88689 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Pcdha4O88689 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Pcdha4O88689 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Pcdha4O88689 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC22.92■■□□□ 1.26
Pcdha4O88689 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Pcdha4O88689 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
Pcdha4O88689 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Pcdha4O88689 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Pcdha4O88689 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC22.91■■□□□ 1.26
Pcdha4O88689 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
Pcdha4O88689 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC22.91■■□□□ 1.26
Pcdha4O88689 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Pcdha4O88689 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC22.9■■□□□ 1.26
Pcdha4O88689 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Pcdha4O88689 AC122428.2-201ENSMUST00000216321 1832 ntBASIC22.9■■□□□ 1.26
Pcdha4O88689 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC22.9■■□□□ 1.26
Pcdha4O88689 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Pcdha4O88689 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Pcdha4O88689 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Pcdha4O88689 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Pcdha4O88689 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Pcdha4O88689 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC22.89■■□□□ 1.26
Pcdha4O88689 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Pcdha4O88689 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Pcdha4O88689 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Pcdha4O88689 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Pcdha4O88689 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Pcdha4O88689 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC22.89■■□□□ 1.25
Pcdha4O88689 Krt8-ps-201ENSMUST00000208495 945 ntBASIC22.89■■□□□ 1.25
Pcdha4O88689 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Pcdha4O88689 Gm13241-201ENSMUST00000094493 780 ntBASIC22.89■■□□□ 1.25
Pcdha4O88689 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Pcdha4O88689 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
Pcdha4O88689 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Pcdha4O88689 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC22.88■■□□□ 1.25
Pcdha4O88689 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Pcdha4O88689 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
Pcdha4O88689 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Pcdha4O88689 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Pcdha4O88689 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
Pcdha4O88689 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Pcdha4O88689 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdha4O88689 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdha4O88689 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdha4O88689 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdha4O88689 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdha4O88689 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdha4O88689 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdha4O88689 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Pcdha4O88689 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Pcdha4O88689 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Pcdha4O88689 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
Pcdha4O88689 Gm43530-201ENSMUST00000195920 274 ntBASIC22.85■■□□□ 1.25
Pcdha4O88689 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Pcdha4O88689 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC22.85■■□□□ 1.25
Pcdha4O88689 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Pcdha4O88689 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
Pcdha4O88689 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Pcdha4O88689 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Pcdha4O88689 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Pcdha4O88689 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
Pcdha4O88689 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Pcdha4O88689 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC22.83■■□□□ 1.25
Pcdha4O88689 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Pcdha4O88689 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Pcdha4O88689 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Pcdha4O88689 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
Pcdha4O88689 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Pcdha4O88689 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Pcdha4O88689 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Pcdha4O88689 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Pcdha4O88689 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Pcdha4O88689 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC22.82■■□□□ 1.24
Pcdha4O88689 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Pcdha4O88689 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC22.82■■□□□ 1.24
Pcdha4O88689 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
Pcdha4O88689 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Pcdha4O88689 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC22.81■■□□□ 1.24
Pcdha4O88689 Gm43034-201ENSMUST00000198678 1364 ntBASIC22.81■■□□□ 1.24
Pcdha4O88689 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Pcdha4O88689 Gm21956-201ENSMUST00000179946 522 ntBASIC22.81■■□□□ 1.24
Pcdha4O88689 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Pcdha4O88689 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Pcdha4O88689 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Pcdha4O88689 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Pcdha4O88689 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Pcdha4O88689 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Pcdha4O88689 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC22.79■■□□□ 1.24
Pcdha4O88689 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Pcdha4O88689 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC22.79■■□□□ 1.24
Pcdha4O88689 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Pcdha4O88689 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Pcdha4O88689 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Pcdha4O88689 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Pcdha4O88689 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Pcdha4O88689 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms