Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Gm45102-201ENSMUST00000207427 857 ntBASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Pcdhgb8A0A140LI48 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 AC117245.4-201ENSMUST00000217388 1646 ntBASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Gm8093-201ENSMUST00000128935 1892 ntBASIC18.29■□□□□ 0.52
Pcdhgb8A0A140LI48 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pcdhgb8A0A140LI48 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC18.27■□□□□ 0.52
Pcdhgb8A0A140LI48 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Pcdhgb8A0A140LI48 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Pcdhgb8A0A140LI48 Kdm3b-204ENSMUST00000224715 2032 ntBASIC18.27■□□□□ 0.51
Pcdhgb8A0A140LI48 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Pcdhgb8A0A140LI48 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Pcdhgb8A0A140LI48 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Pcdhgb8A0A140LI48 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Pcdhgb8A0A140LI48 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Pcdhgb8A0A140LI48 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Pcdhgb8A0A140LI48 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC18.25■□□□□ 0.51
Pcdhgb8A0A140LI48 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Pcdhgb8A0A140LI48 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Pcdhgb8A0A140LI48 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Pcdhgb8A0A140LI48 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Pcdhgb8A0A140LI48 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC18.25■□□□□ 0.51
Pcdhgb8A0A140LI48 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pcdhgb8A0A140LI48 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pcdhgb8A0A140LI48 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pcdhgb8A0A140LI48 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pcdhgb8A0A140LI48 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pcdhgb8A0A140LI48 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pcdhgb8A0A140LI48 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.23■□□□□ 0.51
Pcdhgb8A0A140LI48 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pcdhgb8A0A140LI48 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pcdhgb8A0A140LI48 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdhgb8A0A140LI48 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdhgb8A0A140LI48 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdhgb8A0A140LI48 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdhgb8A0A140LI48 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC18.22■□□□□ 0.51
Pcdhgb8A0A140LI48 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC18.22■□□□□ 0.51
Pcdhgb8A0A140LI48 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdhgb8A0A140LI48 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdhgb8A0A140LI48 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pcdhgb8A0A140LI48 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms