Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Trbv20A0A0B4J1H5 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv20A0A0B4J1H5 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC18.33■□□□□ 0.52
Trbv20A0A0B4J1H5 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC18.33■□□□□ 0.52
Trbv20A0A0B4J1H5 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv20A0A0B4J1H5 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv20A0A0B4J1H5 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv20A0A0B4J1H5 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv20A0A0B4J1H5 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv20A0A0B4J1H5 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv20A0A0B4J1H5 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv20A0A0B4J1H5 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv20A0A0B4J1H5 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv20A0A0B4J1H5 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv20A0A0B4J1H5 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv20A0A0B4J1H5 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv20A0A0B4J1H5 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv20A0A0B4J1H5 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv20A0A0B4J1H5 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv20A0A0B4J1H5 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Trbv20A0A0B4J1H5 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv20A0A0B4J1H5 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Trbv20A0A0B4J1H5 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv20A0A0B4J1H5 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trbv20A0A0B4J1H5 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv20A0A0B4J1H5 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC18.28■□□□□ 0.52
Trbv20A0A0B4J1H5 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv20A0A0B4J1H5 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv20A0A0B4J1H5 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv20A0A0B4J1H5 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv20A0A0B4J1H5 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.27■□□□□ 0.52
Trbv20A0A0B4J1H5 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv20A0A0B4J1H5 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.27■□□□□ 0.52
Trbv20A0A0B4J1H5 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv20A0A0B4J1H5 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv20A0A0B4J1H5 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv20A0A0B4J1H5 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv20A0A0B4J1H5 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv20A0A0B4J1H5 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trbv20A0A0B4J1H5 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Trbv20A0A0B4J1H5 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trbv20A0A0B4J1H5 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv20A0A0B4J1H5 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.25■□□□□ 0.51
Trbv20A0A0B4J1H5 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv20A0A0B4J1H5 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv20A0A0B4J1H5 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 82.1 ms