Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv3A0A0A6YYE2 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC15.79■□□□□ 0.12
Trbv3A0A0A6YYE2 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv3A0A0A6YYE2 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv3A0A0A6YYE2 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Trbv3A0A0A6YYE2 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trbv3A0A0A6YYE2 Hsf1-204ENSMUST00000226872 2104 ntBASIC15.77■□□□□ 0.12
Trbv3A0A0A6YYE2 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trbv3A0A0A6YYE2 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trbv3A0A0A6YYE2 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Trbv3A0A0A6YYE2 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trbv3A0A0A6YYE2 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trbv3A0A0A6YYE2 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Trbv3A0A0A6YYE2 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Trbv3A0A0A6YYE2 AC158990.1-201ENSMUST00000221450 2016 ntBASIC15.77■□□□□ 0.11
Trbv3A0A0A6YYE2 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trbv3A0A0A6YYE2 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Trbv3A0A0A6YYE2 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Trbv3A0A0A6YYE2 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC15.76■□□□□ 0.11
Trbv3A0A0A6YYE2 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC15.76■□□□□ 0.11
Trbv3A0A0A6YYE2 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Trbv3A0A0A6YYE2 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC15.76■□□□□ 0.11
Trbv3A0A0A6YYE2 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trbv3A0A0A6YYE2 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trbv3A0A0A6YYE2 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trbv3A0A0A6YYE2 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC15.75■□□□□ 0.11
Trbv3A0A0A6YYE2 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC15.75■□□□□ 0.11
Trbv3A0A0A6YYE2 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trbv3A0A0A6YYE2 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trbv3A0A0A6YYE2 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trbv3A0A0A6YYE2 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trbv3A0A0A6YYE2 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trbv3A0A0A6YYE2 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trbv3A0A0A6YYE2 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Trbv3A0A0A6YYE2 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC15.74■□□□□ 0.11
Trbv3A0A0A6YYE2 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trbv3A0A0A6YYE2 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trbv3A0A0A6YYE2 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trbv3A0A0A6YYE2 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trbv3A0A0A6YYE2 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trbv3A0A0A6YYE2 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trbv3A0A0A6YYE2 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trbv3A0A0A6YYE2 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trbv3A0A0A6YYE2 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.1
Trbv3A0A0A6YYE2 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trbv3A0A0A6YYE2 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trbv3A0A0A6YYE2 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trbv3A0A0A6YYE2 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Trbv3A0A0A6YYE2 Gm8503-201ENSMUST00000118131 455 ntBASIC15.7■□□□□ 0.1
Trbv3A0A0A6YYE2 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC15.7■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms