Protein–RNA interactions for Protein: A0A075B624

Trav15d-1-dv6d-1, T cell receptor alpha variable 15D-1-DV6D-1 (Fragment), mousemouse

Predictions only

Length 124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav15d-1-dv6d-1A0A075B624 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Gm7332-201ENSMUST00000118351 454 ntBASIC17.34■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Gm43592-201ENSMUST00000196922 1165 ntBASIC17.34■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 AC122428.2-201ENSMUST00000216321 1832 ntBASIC17.34■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Gm4430-201ENSMUST00000192413 1943 ntBASIC17.33■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav15d-1-dv6d-1A0A075B624 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Gm5131-201ENSMUST00000212776 1238 ntBASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Gm11847-201ENSMUST00000125165 1119 ntBASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav15d-1-dv6d-1A0A075B624 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC17.27■□□□□ 0.35
Trav15d-1-dv6d-1A0A075B624 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav15d-1-dv6d-1A0A075B624 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav15d-1-dv6d-1A0A075B624 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav15d-1-dv6d-1A0A075B624 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC17.27■□□□□ 0.35
Trav15d-1-dv6d-1A0A075B624 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav15d-1-dv6d-1A0A075B624 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav15d-1-dv6d-1A0A075B624 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC17.27■□□□□ 0.35
Trav15d-1-dv6d-1A0A075B624 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms