Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Pkn3-201ENSMUST00000045246 3113 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Gm42141-201ENSMUST00000196534 2172 ntBASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 AC123857.2-201ENSMUST00000225756 1582 ntBASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Gm8885-201ENSMUST00000189382 598 ntBASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Gm35850-202ENSMUST00000211705 2120 ntBASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Gm38089-201ENSMUST00000193585 1514 ntBASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lima1Q9ERG0 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Gm5740-201ENSMUST00000211003 1857 ntBASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Gm37954-201ENSMUST00000195400 2071 ntBASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Gm14005-209ENSMUST00000224993 1832 ntBASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11.42□□□□□ -0.58
Lima1Q9ERG0 AC159896.2-201ENSMUST00000214753 269 ntBASIC11.42□□□□□ -0.58
Lima1Q9ERG0 AC154319.1-201ENSMUST00000216330 312 ntBASIC11.42□□□□□ -0.58
Lima1Q9ERG0 AL589735.1-201ENSMUST00000224353 270 ntBASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Gm29245-201ENSMUST00000187332 1416 ntBASIC11.42□□□□□ -0.58
Lima1Q9ERG0 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Lima1Q9ERG0 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 AC127597.1-201ENSMUST00000225697 5711 ntBASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Lima1Q9ERG0 AC154537.1-201ENSMUST00000226101 1304 ntBASIC11.41□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 81.5 ms