Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm24891-201ENSMUST00000104391 136 ntBASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm16140-201ENSMUST00000117191 1060 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm13263-201ENSMUST00000121271 838 ntBASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm34767-201ENSMUST00000191813 1062 ntBASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 AU022133-201ENSMUST00000200601 873 ntBASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Mir219a-1-201ENSMUST00000083621 110 ntBASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gm13461-201ENSMUST00000120980 662 ntBASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gm8199-201ENSMUST00000121323 823 ntBASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gm10807-201ENSMUST00000177134 795 ntBASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gm5733-201ENSMUST00000190232 939 ntBASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 AC112945.1-201ENSMUST00000226413 514 ntBASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 AC122811.1-201ENSMUST00000222257 2921 ntBASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Ddx56Q9D0R4 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms