Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Scrt1Q99M85 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm10152-201ENSMUST00000193475 1344 ntBASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm44270-201ENSMUST00000203084 1234 ntBASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm8956-201ENSMUST00000203939 825 ntBASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm18463-201ENSMUST00000207258 474 ntBASIC10.2□□□□□ -0.78
Scrt1Q99M85 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm6722-201ENSMUST00000221586 390 ntBASIC10.2□□□□□ -0.78
Scrt1Q99M85 AC165260.2-203ENSMUST00000224237 336 ntBASIC10.2□□□□□ -0.78
Scrt1Q99M85 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Scrt1Q99M85 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC10.19□□□□□ -0.78
Scrt1Q99M85 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Gm6903-201ENSMUST00000160509 1366 ntBASIC10.19□□□□□ -0.78
Scrt1Q99M85 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Scrt1Q99M85 Gm13022-201ENSMUST00000121181 285 ntBASIC10.19□□□□□ -0.78
Scrt1Q99M85 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC10.19□□□□□ -0.78
Scrt1Q99M85 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC10.19□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms