Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Gm19287-201ENSMUST00000203190 358 ntBASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Adat1-201ENSMUST00000034427 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Gm5847-201ENSMUST00000178959 1595 ntBASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Ndufb2-205ENSMUST00000135671 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ccdc40Q8BI79 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Mid1-201ENSMUST00000036753 3753 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Olfr463-202ENSMUST00000215150 2031 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 AC123619.2-202ENSMUST00000225097 1568 ntBASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Gm13350-201ENSMUST00000120519 479 ntBASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Gm7172-201ENSMUST00000218047 1152 ntBASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 8030423F21Rik-201ENSMUST00000064097 2851 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ccdc40Q8BI79 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
Ccdc40Q8BI79 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.47
Ccdc40Q8BI79 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Ccdc40Q8BI79 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
Ccdc40Q8BI79 Rhoj-203ENSMUST00000118966 4892 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Ccdc40Q8BI79 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Ccdc40Q8BI79 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gramd1b-213ENSMUST00000211853 2659 ntTSL 5 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm43172-201ENSMUST00000202139 2137 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 BC035947-201ENSMUST00000170511 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm26286-201ENSMUST00000104166 134 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm25890-201ENSMUST00000177643 165 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Rnu1b2-201ENSMUST00000178073 165 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Rnu1b1-201ENSMUST00000178250 165 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm22614-201ENSMUST00000178300 165 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm44967-201ENSMUST00000207047 631 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm22042-201ENSMUST00000082989 165 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm26110-201ENSMUST00000083971 165 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Olfr582-201ENSMUST00000098212 960 ntBASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Ankrd52-201ENSMUST00000014642 6620 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC12.14□□□□□ -0.47
Ccdc40Q8BI79 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms