Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 4930433J02Rik-201ENSMUST00000194719 1386 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm23085-201ENSMUST00000157849 293 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm17391-201ENSMUST00000171036 126 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm3332-201ENSMUST00000189337 928 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm42682-201ENSMUST00000198349 1265 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm9797-202ENSMUST00000218003 294 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm807-202ENSMUST00000224929 408 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Ginm1-202ENSMUST00000065124 300 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm44755-201ENSMUST00000207830 2102 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm37931-201ENSMUST00000194686 2866 ntBASIC13.64□□□□□ -0.23
Limch1Q3UH68 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Limch1Q3UH68 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm13347-201ENSMUST00000120298 1353 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm24891-201ENSMUST00000104391 136 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm12029-201ENSMUST00000120073 832 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm28937-201ENSMUST00000185413 695 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm29400-201ENSMUST00000187208 695 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm28662-201ENSMUST00000188446 695 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm28251-201ENSMUST00000188835 695 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm37318-201ENSMUST00000194325 695 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm38017-201ENSMUST00000194768 695 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm37287-201ENSMUST00000195449 695 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm37793-201ENSMUST00000195548 695 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC13.63□□□□□ -0.23
Limch1Q3UH68 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Limch1Q3UH68 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Limch1Q3UH68 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Limch1Q3UH68 Rgr-203ENSMUST00000225070 4704 ntBASIC13.62□□□□□ -0.23
Limch1Q3UH68 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Limch1Q3UH68 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Limch1Q3UH68 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Limch1Q3UH68 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Limch1Q3UH68 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 77.9 ms