Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Gm3642-201ENSMUST00000166895 1762 ntAPPRIS P5 TSL 5 BASIC17.56■□□□□ 0.4
Cux1P53564 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Cux1P53564 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Cux1P53564 Gm28651-201ENSMUST00000185335 644 ntTSL 3 BASIC17.56■□□□□ 0.4
Cux1P53564 Gm33366-201ENSMUST00000195583 3827 ntBASIC17.56■□□□□ 0.4
Cux1P53564 Gm30731-201ENSMUST00000203909 825 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Ftl1-204ENSMUST00000210864 503 ntTSL 5 BASIC17.56■□□□□ 0.4
Cux1P53564 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cux1P53564 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Cux1P53564 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Cux1P53564 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC17.55■□□□□ 0.4
Cux1P53564 Triml2-202ENSMUST00000209200 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Cux1P53564 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
Cux1P53564 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Tex29-204ENSMUST00000166638 561 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Cux1P53564 Vmn1r-ps63-201ENSMUST00000174565 989 ntBASIC17.55■□□□□ 0.4
Cux1P53564 Gm29521-201ENSMUST00000187061 745 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Calca-207ENSMUST00000206853 720 ntTSL 2 BASIC17.55■□□□□ 0.4
Cux1P53564 Gm3318-201ENSMUST00000217604 1183 ntBASIC17.55■□□□□ 0.4
Cux1P53564 AC102847.1-202ENSMUST00000226313 1245 ntBASIC17.55■□□□□ 0.4
Cux1P53564 Nkg7-201ENSMUST00000070518 881 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Olfr700-201ENSMUST00000079936 951 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Cux1P53564 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Cux1P53564 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Gm42829-201ENSMUST00000198417 2585 ntBASIC17.55■□□□□ 0.4
Cux1P53564 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC17.55■□□□□ 0.4
Cux1P53564 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Cux1P53564 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC17.55■□□□□ 0.4
Cux1P53564 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
Cux1P53564 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Gm42941-201ENSMUST00000200347 1321 ntBASIC17.55■□□□□ 0.4
Cux1P53564 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 AC022682.1-201ENSMUST00000224624 2023 ntBASIC17.55■□□□□ 0.4
Cux1P53564 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cux1P53564 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC17.54■□□□□ 0.4
Cux1P53564 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Cux1P53564 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC17.54■□□□□ 0.4
Cux1P53564 Pfn1-202ENSMUST00000108549 608 ntTSL 2 BASIC17.54■□□□□ 0.4
Cux1P53564 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC17.54■□□□□ 0.4
Cux1P53564 Bnip2-208ENSMUST00000165389 945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Gm18733-202ENSMUST00000174447 401 ntBASIC17.54■□□□□ 0.4
Cux1P53564 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC17.54■□□□□ 0.4
Cux1P53564 Cdhr4-208ENSMUST00000176373 492 ntTSL 5 BASIC17.54■□□□□ 0.4
Cux1P53564 Myo1h-206ENSMUST00000196467 1208 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC17.54■□□□□ 0.4
Cux1P53564 Gm45542-201ENSMUST00000210456 438 ntTSL 2 BASIC17.54■□□□□ 0.4
Cux1P53564 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cux1P53564 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC17.54■□□□□ 0.4
Cux1P53564 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cux1P53564 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Cux1P53564 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC17.53■□□□□ 0.4
Cux1P53564 Gm12745-201ENSMUST00000121767 214 ntBASIC17.53■□□□□ 0.4
Cux1P53564 Pax5-209ENSMUST00000165417 1056 ntTSL 5 BASIC17.53■□□□□ 0.4
Cux1P53564 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Cux1P53564 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC17.53■□□□□ 0.4
Cux1P53564 Ighv1-2-201ENSMUST00000195325 378 ntBASIC17.53■□□□□ 0.4
Cux1P53564 4930447C11Rik-201ENSMUST00000204503 928 ntBASIC17.53■□□□□ 0.4
Cux1P53564 Gm7238-201ENSMUST00000206467 973 ntBASIC17.53■□□□□ 0.4
Cux1P53564 AC159196.1-201ENSMUST00000225524 377 ntBASIC17.53■□□□□ 0.4
Cux1P53564 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC17.53■□□□□ 0.4
Cux1P53564 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Gm5739-201ENSMUST00000208601 1703 ntBASIC17.53■□□□□ 0.4
Cux1P53564 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Gm44153-201ENSMUST00000204162 1580 ntBASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms