Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC13.04□□□□□ -0.32
Smc1aQ9CU62 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Smc1aQ9CU62 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Smc1aQ9CU62 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Gm14058-201ENSMUST00000116082 735 ntBASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Gm43830-201ENSMUST00000198760 1067 ntBASIC13.03□□□□□ -0.32
Smc1aQ9CU62 AC098716.1-201ENSMUST00000213527 703 ntBASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Gm5369-201ENSMUST00000217499 588 ntBASIC13.03□□□□□ -0.32
Smc1aQ9CU62 AC125486.1-201ENSMUST00000218701 320 ntBASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 AC166359.1-201ENSMUST00000220243 1871 ntBASIC13.03□□□□□ -0.32
Smc1aQ9CU62 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Gm38292-201ENSMUST00000192646 3045 ntBASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Gm9544-201ENSMUST00000223349 2482 ntBASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Smc1aQ9CU62 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Smc1aQ9CU62 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm19692-201ENSMUST00000203856 2084 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm22133-201ENSMUST00000102082 109 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm13035-201ENSMUST00000117496 342 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm15515-201ENSMUST00000117827 822 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm13045-201ENSMUST00000119019 712 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm19353-201ENSMUST00000184561 445 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm18304-201ENSMUST00000189162 546 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm19994-201ENSMUST00000217086 586 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm13142-201ENSMUST00000117213 1453 ntBASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC13.02□□□□□ -0.33
Smc1aQ9CU62 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Gm8038-201ENSMUST00000164674 2044 ntBASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Smc1aQ9CU62 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms